Elucidating the evolutionary history and expression patterns of nucleoside phosphorylase paralogs (vegetative storage proteins) in Populus and the plant kingdom

The evolution of catalytic residues and enzyme mechanism within the bacterial nucleoside phosphorylase superfamily 1

(2012) Anke Konrad et al.   GENE

Evolutionary Dynamics and Functional Specialization of Plant Paralogs Formed by Whole and Small-Scale Genome Duplications

(2012) Lorenzo Carretero-Paulet et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of flax (Linum usitatissimum) assembledde novofrom short shotgun sequence reads

(2012) Zhiwen Wang et al.   PLANT JOURNAL

Zea mays Taxilin Protein Negatively Regulates Opaque-2 Transcriptional Activity by Causing a Change in Its Sub-Cellular Distribution

(2012) Nan Zhang et al.   PLoS One

A genome triplication associated with early diversification of the core eudicots

(2012) Yuannian Jiao et al.   GENOME BIOLOGY

MotifClick: prediction of cis-regulatory binding sites via merging cliques

(2011) Shaoqiang Zhang et al.   BMC BIOINFORMATICS

Multiple Routes to Subfunctionalization and Gene Duplicate Specialization

(2011) Stephen R. Proulx   GENETICS

Toward a General Model for the Evolutionary Dynamics of Gene Duplicates

(2011) Anke Konrad et al.   Genome Biology and Evolution

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

(2011) E. Rodgers-Melnick et al.   GENOME RESEARCH

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

(2011) Sergei L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The rate of multi-step evolution in Moran and Wright–Fisher populations

(2011) Stephen R. Proulx   THEORETICAL POPULATION BIOLOGY

The biochemistry of nitrogen mobilization: purine ring catabolism

(2011) Andrea K. Werner et al.   TRENDS IN PLANT SCIENCE

A Functional Phylogenomic View of the Seed Plants

(2011) Ernest K. Lee et al.   PLoS Genetics

High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus

(2010) Sofia Berlin et al.   BMC GENOMICS

The RAV1 transcription factor positively regulates leaf senescence in Arabidopsis

(2010) Hye Ryun Woo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Purine nucleoside phosphorylase activity and expression are upregulated in sites affected by periodontal disease

(2010) E. L. Batista Jr et al.   JOURNAL OF PERIODONTAL RESEARCH

Arabidopsis nucleoside hydrolases involved in intracellular and extracellular degradation of purines

(2010) Benjamin Jung et al.   PLANT JOURNAL

Perennial lifestyle--an adaptation to nutrient limitation?

(2010) H. RENNENBERG et al.   TREE PHYSIOLOGY

Nitrogen storage and remobilization by trees: ecophysiological relevance in a changing world

(2010) P. Millard et al.   TREE PHYSIOLOGY

Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

(2009) Patrick P. Edger et al.   CHROMOSOME RESEARCH

A functional analysis of the pyrimidine catabolic pathway in Arabidopsis

(2009) Rita Zrenner et al.   NEW PHYTOLOGIST

Evolutionary History and Stress Regulation of Plant Receptor-Like Kinase/Pelle Genes

(2009) M. D. Lehti-Shiu et al.   PLANT PHYSIOLOGY

Rosid radiation and the rapid rise of angiosperm-dominated forests

(2009) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups

(2008) Wen-Chi Chang et al.   BMC GENOMICS

Neofunctionalization of Duplicated Genes Under the Pressure of Gene Conversion

(2008) K. M. Teshima et al.   GENETICS

Exposing the fitness contribution of duplicated genes

(2008) Alexander DeLuna et al.   NATURE GENETICS

A critical role for ureides in dark and senescence-induced purine remobilization is unmasked in the Atxdh1 Arabidopsis mutant

(2008) Galina Brychkova et al.   PLANT JOURNAL

Genome-wide identification of NBS resistance genes in Populus trichocarpa

(2008) Annegret Kohler et al.   PLANT MOLECULAR BIOLOGY

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

(2008) Martin C. Frith et al.   PLoS Computational Biology