Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis

Pulsed blooms and persistent oil-degrading bacterial populations in the water column during and after the Deepwater Horizon blowout

(2016) Tingting Yang et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities

(2016) Kim-Anh Lê Cao et al.   PLoS One

Co-acclimation of bacterial communities under stresses of hydrocarbons with different structures

(2016) Hui Wang et al.   Scientific Reports

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Biodegradation of dispersed Macondo oil in seawater at low temperature and different oil droplet sizes

(2015) Odd G. Brakstad et al.   MARINE POLLUTION BULLETIN

Uptake and trans-membrane transport of petroleum hydrocarbons by microorganisms

(2014) Fei Hua et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Depletion and biodegradation of hydrocarbons in dispersions and emulsions of the Macondo 252 oil generated in an oil-on-seawater mesocosm flume basin

(2014) Odd G. Brakstad et al.   MARINE POLLUTION BULLETIN

Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil Spill in the Gulf of Mexico

(2013) Eric A. Dubinsky et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Estimation of hydrocarbon biodegradation rates in marine environments: A critical review of the Q10 approach

(2013) Andrea Bagi et al.   MARINE ENVIRONMENTAL RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The primary biodegradation of dispersed crude oil in the sea

(2012) Roger C. Prince et al.   CHEMOSPHERE

Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

(2012) Jacob Baelum et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Novel Methane-, Ethane-, and Propane-Oxidizing Bacteria at Marine Hydrocarbon Seeps by Stable Isotope Probing

(2010) M. C. Redmond et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Composition of the water accommodated fractions as a function of exposure times and temperatures

(2008) Liv-Guri Faksness et al.   MARINE POLLUTION BULLETIN