Construction of a mariner-based transposon vector for use in insertion sequence mutagenesis in selected members of the Rhizobiaceae
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Construction of a mariner-based transposon vector for use in insertion sequence mutagenesis in selected members of the Rhizobiaceae
Authors
Keywords
Hide Markov Model, Transposition Frequency, Mutant Pool, Hide Markov Model Analysis, Insertion Density
Journal
BMC MICROBIOLOGY
Volume 14, Issue 1, Pages -
Publisher
Springer Nature
Online
2014-11-29
DOI
10.1186/s12866-014-0298-z
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries
- (2013) Michael A. DeJesus et al. BIOINFORMATICS
- A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data
- (2013) Michael A DeJesus et al. BMC BIOINFORMATICS
- Identification of Genes Required by Bacillus thuringiensis for Survival in Soil by Transposon-Directed Insertion Site Sequencing
- (2013) Alistair H. Bishop et al. CURRENT MICROBIOLOGY
- Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms
- (2013) Tim van Opijnen et al. NATURE REVIEWS MICROBIOLOGY
- High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model–based analyses of transposon-insertion sequencing data
- (2013) Michael C. Chao et al. NUCLEIC ACIDS RESEARCH
- Combining Functional and Structural Genomics to Sample the Essential Burkholderia Structome
- (2013) Loren Baugh et al. PLoS One
- Identification of T6SS-dependent effector and immunity proteins by Tn-seq in Vibrio cholerae
- (2013) T. G. Dong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Approaches to querying bacterial genomes with transposon-insertion sequencing
- (2013) Lars Barquist et al. RNA Biology
- The Serum Resistome of a Globally Disseminated Multidrug Resistant Uropathogenic Escherichia coli Clone
- (2013) Minh-Duy Phan et al. PLoS Genetics
- A Comprehensive Analysis of In Vitro and In Vivo Genetic Fitness of Pseudomonas aeruginosa Using High-Throughput Sequencing of Transposon Libraries
- (2013) David Skurnik et al. PLoS Pathogens
- Gene Fitness Landscapes of Vibrio cholerae at Important Stages of Its Life Cycle
- (2013) Heather D. Kamp et al. PLoS Pathogens
- Genome Scanning for Conditionally Essential Genes in Salmonella enterica Serotype Typhimurium
- (2012) Anita Khatiwara et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis
- (2012) Brian A Klein et al. BMC GENOMICS
- High-throughput comparison of gene fitness among related bacteria
- (2012) Rocio Canals et al. BMC GENOMICS
- Inability To Catabolize Galactose Leads to Increased Ability To Compete for Nodule Occupancy in Sinorhizobium meliloti
- (2012) Barney A. Geddes et al. JOURNAL OF BACTERIOLOGY
- Glycerol utilization by Rhizobium leguminosarum requires an ABC transporter and affects competition for nodulation
- (2012) H. Ding et al. MICROBIOLOGY-SGM
- Anomalies of the anaerobic tricarboxylic acid cycle inShewanella oneidensisrevealed by Tn-seq
- (2012) Evan D. Brutinel et al. MOLECULAR MICROBIOLOGY
- Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis
- (2012) Yanjia J. Zhang et al. PLoS Pathogens
- Mutation of a Broadly Conserved Operon (RL3499-RL3502) from Rhizobium leguminosarum Biovar viciae Causes Defects in Cell Morphology and Envelope Integrity
- (2011) E. M. Vanderlinde et al. JOURNAL OF BACTERIOLOGY
- The essential genome of a bacterium
- (2011) B. Christen et al. Molecular Systems Biology
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries
- (2011) Andrew L Goodman et al. Nature Protocols
- Genome-Scale Identification of Resistance Functions in Pseudomonas aeruginosa Using Tn-seq
- (2011) L. A. Gallagher et al. mBio
- High-Resolution Phenotypic Profiling Defines Genes Essential for Mycobacterial Growth and Cholesterol Catabolism
- (2011) Jennifer E. Griffin et al. PLoS Pathogens
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Plasmid transfer systems in the rhizobia
- (2009) Hao Ding et al. CANADIAN JOURNAL OF MICROBIOLOGY
- Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat
- (2009) Andrew L. Goodman et al. Cell Host & Microbe
- Identification of a novel ABC transporter required for desiccation tolerance, and biofilm formation inRhizobium leguminosarumbv.viciae3841
- (2009) Elizabeth M. Vanderlinde et al. FEMS MICROBIOLOGY ECOLOGY
- Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants
- (2009) G. C. Langridge et al. GENOME RESEARCH
- Rhizobium leguminosarum biovar viciae 3841, deficient in 27-hydroxyoctacosanoate-modified lipopolysaccharide, is impaired in desiccation tolerance, biofilm formation and motility
- (2009) E. M. Vanderlinde et al. MICROBIOLOGY-SGM
- Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
- (2009) Tim van Opijnen et al. NATURE METHODS
- Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung
- (2009) J. D. Gawronski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started