Automatic extraction of protein-protein interactions using grammatical relationship graph

Distributed smoothed tree kernel for protein-protein interaction extraction from the biomedical literature

(2017) Gurusamy Murugesan et al.   PLoS One

A protein-protein interaction extraction approach based on deep neural network

(2016) Zhehuan Zhao et al.   International Journal of Data Mining and Bioinformatics

PPInterFinder—a mining tool for extracting causal relations on human proteins from literature

(2013) Kalpana Raja et al.   Database-The Journal of Biological Databases and Curation

A Unified Active Learning Framework for Biomedical Relation Extraction

(2012) Hong-Tao Zhang et al.   JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY

The BioGRID interaction database: 2013 update

(2012) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

Integrated Bio-Entity Network: A System for Biological Knowledge Discovery

(2011) Lindsey Bell et al.   PLoS One

A hybrid approach to extract protein-protein interactions

(2010) Q.-C. Bui et al.   BIOINFORMATICS

Extracting causal relations on HIV drug resistance from literature

(2010) Quoc-Chinh Bui et al.   BMC BIOINFORMATICS

Protein Interactome Analysis for Countering Pathogen Drug Resistance

(2010) Limsoon Wong et al.   JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

A Comprehensive Benchmark of Kernel Methods to Extract Protein–Protein Interactions from Literature

(2010) Domonkos Tikk et al.   PLoS Computational Biology

Bayesian inference of protein–protein interactions from biological literature

(2009) Rajesh Chowdhary et al.   BIOINFORMATICS

Protein–protein interaction extraction by leveraging multiple kernels and parsers

(2009) Makoto Miwa et al.   INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS

MINT, the molecular interaction database: 2009 update

(2009) Arnaud Ceol et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans

(2009) Ivan Iossifov et al.   PLoS Computational Biology

Evaluating contributions of natural language parsers to protein-protein interaction extraction

(2008) Y. Miyao et al.   BIOINFORMATICS

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

(2008) Antti Airola et al.   BMC BIOINFORMATICS

Large-scale directional relationship extraction and resolution

(2008) Cory B Giles et al.   BMC BIOINFORMATICS

Mapping proteins to disease terminologies: from UniProt to MeSH

(2008) Anaïs Mottaz et al.   BMC BIOINFORMATICS

Comparative analysis of five protein-protein interaction corpora

(2008) Sampo Pyysalo et al.   BMC BIOINFORMATICS

Seeking a New Biology through Text Mining

(2008) Andrey Rzhetsky et al.   CELL

Linking entries in protein interaction database to structured text: The FEBS Letters experiment

(2008) Arnaud Ceol et al.   FEBS LETTERS

PIE: an online prediction system for protein-protein interactions from text

(2008) S. Kim et al.   NUCLEIC ACIDS RESEARCH

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes

(2008) A. Grote et al.   NUCLEIC ACIDS RESEARCH

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Overview of the protein-protein interaction annotation extraction task of BioCreative II

(2008) Martin Krallinger et al.   GENOME BIOLOGY

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge

(2008) Martin Krallinger et al.   GENOME BIOLOGY

Mining physical protein-protein interactions from the literature

(2008) Minlie Huang et al.   GENOME BIOLOGY