Disruption of Mycobacterium avium subsp. paratuberculosis-specific genes impairs in vivo fitness

Host-Mycobacterium avium subsp. paratuberculosis interactome reveals a novel iron assimilation mechanism linked to nitric oxide stress during early infection

(2013) Elise A Lamont et al.   BMC GENOMICS

Genomic variations associated with attenuation in Mycobacterium avium subsp. paratuberculosis vaccine strains

(2013) Tim J Bull et al.   BMC MICROBIOLOGY

Tryptophan Biosynthesis Protects Mycobacteria from CD4 T-Cell-Mediated Killing

(2013) Yanjia J. Zhang et al.   CELL

Mapping and Regulation of Genes within Salmonella Pathogenicity Island 12 That Contribute toIn VivoFitness of Salmonella enterica Serovar Typhimurium

(2013) Ana M. Tomljenovic-Berube et al.   INFECTION AND IMMUNITY

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

(2013) Philip Supply et al.   NATURE GENETICS

High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model–based analyses of transposon-insertion sequencing data

(2013) Michael C. Chao et al.   NUCLEIC ACIDS RESEARCH

A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium

(2013) Lars Barquist et al.   NUCLEIC ACIDS RESEARCH

The Critical Role of DNA Extraction for Detection of Mycobacteria in Tissues

(2013) Nicolas Radomski et al.   PLoS One

A Comprehensive Analysis of In Vitro and In Vivo Genetic Fitness of Pseudomonas aeruginosa Using High-Throughput Sequencing of Transposon Libraries

(2013) David Skurnik et al.   PLoS Pathogens

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Uptake and Persistence of Mycobacterium avium subsp. paratuberculosis in Human Monocytes

(2012) Dayle A. Keown et al.   INFECTION AND IMMUNITY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis

(2012) Yanjia J. Zhang et al.   PLoS Pathogens

Potentially pathogenic nontuberculous mycobacteria found in aquatic systems. Analysis from a reclaimed water and water distribution system in Mexico City

(2011) A. I. Castillo-Rodal et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

High-Resolution Phenotypic Profiling Defines Genes Essential for Mycobacterial Growth and Cholesterol Catabolism

(2011) Jennifer E. Griffin et al.   PLoS Pathogens

Interrogation of global mutagenesis data with a genome scale model of Neisseria meningitidis to assess gene fitness in vitro and in sera

(2011) Tom A Mendum et al.   GENOME BIOLOGY

Primary transcriptomes of Mycobacterium avium subsp. paratuberculosis reveal proprietary pathways in tissue and macrophages

(2010) Harish K Janagama et al.   BMC GENOMICS

Resequencing the Mycobacterium avium subsp. paratuberculosis K10 Genome: Improved Annotation and Revised Genome Sequence

(2010) J. W. Wynne et al.   JOURNAL OF BACTERIOLOGY

A Benchmark of Parametric Methods for Horizontal Transfers Detection

(2010) Jennifer Becq et al.   PLoS One

TubercuList – 10 years after

(2010) Jocelyne M. Lew et al.   TUBERCULOSIS

Complete genome sequence of Geodermatophilus obscurus type strain (G-20T)

(2010) Natalia Ivanova et al.   Standards in Genomic Sciences

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Phylogenetic detection of horizontal gene transfer during the step-wise genesis of Mycobacterium tuberculosis

(2009) Frédéric Veyrier et al.   BMC EVOLUTIONARY BIOLOGY

Biofilm formation by Mycobacterium avium isolates originating from humans, swine and birds

(2009) Tone Johansen et al.   BMC MICROBIOLOGY

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations

(2009) R. D. Barabote et al.   GENOME RESEARCH

PapA3 Is an Acyltransferase Required for Polyacyltrehalose Biosynthesis inMycobacterium tuberculosis

(2009) Stavroula K. Hatzios et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Opportunistic pathogens enriched in showerhead biofilms

(2009) L. M. Feazel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovery of Stable and Variable Differences in the Mycobacterium avium subsp. paratuberculosis Type I, II, and III Genomes by Pan-Genome Microarray Analysis

(2008) E. Castellanos et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

Mycobacterium avium subsp. paratuberculosis and M. avium subsp. avium Are Independently Evolved Pathogenic Clones of a Much Broader Group of M. avium Organisms

(2008) C. Y. Turenne et al.   JOURNAL OF BACTERIOLOGY

Insertion and Deletion Events That Define the PathogenMycobacterium aviumsubsp.paratuberculosis

(2008) David C. Alexander et al.   JOURNAL OF BACTERIOLOGY