A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversity

Hybridization Capture Reveals Evolution and Conservation across the Entire Koala Retrovirus Genome

(2014) Kyriakos Tsangaras et al.   PLoS One

Koalas use a novel vocal organ to produce unusually low-pitched mating calls

(2013) Benjamin D. Charlton et al.   CURRENT BIOLOGY

Heterogeneity of koala retrovirus isolates

(2013) Sayumi Shimode et al.   FEBS LETTERS

Molecular characterisation and expression analysis of Interferon gamma in response to natural Chlamydia infection in the koala, Phascolarctos cinereus

(2013) Marina Mathew et al.   GENE

Identification of a Novel Subgroup of Koala Retrovirus from Koalas in Japanese Zoos

(2013) T. Shojima et al.   JOURNAL OF VIROLOGY

Construction and Characterization of an Infectious Molecular Clone of Koala Retrovirus

(2013) T. Shojima et al.   JOURNAL OF VIROLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

An exogenous retrovirus isolated from koalas with malignant neoplasias in a US zoo

(2013) W. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Koala retroviruses: characterization and impact on the life of koalas

(2013) Joachim Denner et al.   Retrovirology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Prevalence of koala retrovirus in geographically diverse populations in Australia

(2012) GS Simmons et al.   AUSTRALIAN VETERINARY JOURNAL

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

(2012) Elizabeth P. Murchison et al.   CELL

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

One Hundred Twenty Years of Koala Retrovirus Evolution Determined from Museum Skins

(2012) M. C. Avila-Arcos et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Herds Overhead: Nimbadon lavarackorum (Diprotodontidae), Heavyweight Marsupial Herbivores in the Miocene Forests of Australia

(2012) Karen H. Black et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Cytochrome P450 CYP3A in marsupials: Cloning and characterisation of the second identified CYP3A subfamily member, isoform 3A78 from koala (Phascolarctos cinereus)

(2011) Adaweyah El-Merhibi et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

A Jurassic eutherian mammal and divergence of marsupials and placentals

(2011) Zhe-Xi Luo et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

(2011) Marilyn B Renfree et al.   GENOME BIOLOGY

Isolation of Koala Retroviruses from Koalas in Japan

(2010) Takayuki MIYAZAWA et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Individual Differences in AMY1 Gene Copy Number, Salivary α-Amylase Levels, and the Perception of Oral Starch

(2010) Abigail L. Mandel et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Cloning and expression of koala (Phascolarctos cinereus) liver cytochrome P450 reductase

(2009) Sandra Kong et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

A phylogeny of Diprotodontia (Marsupialia) based on sequences for five nuclear genes

(2009) Robert W. Meredith et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hepatic cytochrome P450 enzymes belonging to the CYP2C subfamily from an Australian marsupial, the koala (Phascolarctos cinereus)

(2008) Brett R. Jones et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH