Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions

Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum

(2013) Amanda K Gibson et al.   BMC GENOMICS

Enchytraeus crypticus as model species in soil ecotoxicology

(2012) Marta P. Castro-Ferreira et al.   CHEMOSPHERE

Exposure of Enchytraeus albidus to Cd and Zn – Changes in cellular energy allocation (CEA) and linkage to transcriptional, enzymatic and reproductive effects

(2012) Sara C. Novais et al.   CHEMOSPHERE

Transcriptional responses inEnchytraeus albidus(Oligochaeta): Comparison between cadmium and zinc exposure and linkage to reproduction effects

(2012) Sara C. Novais et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Gene Expression Responses Linked to Reproduction Effect Concentrations (EC10,20,50,90) of Dimethoate, Atrazine and Carbendazim, in Enchytraeus albidus

(2012) Sara C. Novais et al.   PLoS One

Enchytraeus albidus Microarray: Enrichment, Design, Annotation and Database (EnchyBASE)

(2012) Sara C. Novais et al.   PLoS One

iPath2.0: interactive pathway explorer

(2011) Takuji Yamada et al.   NUCLEIC ACIDS RESEARCH

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

(2010)   NATURE BIOTECHNOLOGY

Gene Expression Analysis Reveals a Gene Set Discriminatory to Different Metals in Soil

(2010) Benjamin Nota et al.   TOXICOLOGICAL SCIENCES

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY