Computational analysis of auxin responsive elements in the Arabidopsis thaliana L. genome

Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors

(2014) D. Roeland Boer et al.   CELL

Tuning the auxin transcriptional response

(2013) Edith Pierre-Jerome et al.   JOURNAL OF EXPERIMENTAL BOTANY

Auxin: simply complicated

(2013) Michael Sauer et al.   JOURNAL OF EXPERIMENTAL BOTANY

HOW MULTIPLE AUXIN RESPONSIVE ELEMENTS MAY INTERACT IN PLANT PROMOTERS: A REVERSE PROBLEM SOLUTION

(2013) VICTORIA V. MIRONOVA et al.   Journal of Bioinformatics and Computational Biology

Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription

(2012) Kenneth W Berendzen et al.   BMC PLANT BIOLOGY

Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses

(2012) Eunkyoo Oh et al.   NATURE CELL BIOLOGY

Pattern of Auxin and Cytokinin Responses for Shoot Meristem Induction Results from the Regulation of Cytokinin Biosynthesis by AUXIN RESPONSE FACTOR3

(2012) Z. J. Cheng et al.   PLANT PHYSIOLOGY

Reciprocal Loss of CArG-Boxes and Auxin Response Elements Drives Expression Divergence of MPF2-Like MADS-Box Genes Controlling Calyx Inflation

(2012) Muhammad Ramzan Khan et al.   PLoS One

Analysis and recognition of the GAGA transcription factor binding sites in Drosophila genes

(2011) E.S. Omelina et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

AUXIN RESPONSE FACTOR8 Regulates Arabidopsis Petal Growth by Interacting with the bHLH Transcription Factor BIGPETALp

(2011) E. Varaud et al.   PLANT CELL

Bipartite Promoter Element Required for Auxin Response

(2011) C. L. Walcher et al.   PLANT PHYSIOLOGY

De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference

(2011) Jens Keilwagen et al.   PLoS Computational Biology

Deep and wide digging for binding motifs in ChIP-Seq data

(2010) I. V. Kulakovskiy et al.   BIOINFORMATICS

Integration of Brassinosteroid Signal Transduction with the Transcription Network for Plant Growth Regulation in Arabidopsis

(2010) Yu Sun et al.   DEVELOPMENTAL CELL

The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery

(2010) T. J. Parry et al.   GENES & DEVELOPMENT

Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers

(2010) V. Gotea et al.   GENOME RESEARCH

Hormonal control of the shoot stem-cell niche

(2010) Zhong Zhao et al.   NATURE

MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor

(2010) Alexandra Schlereth et al.   NATURE

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Spatio-temporal sequence of cross-regulatory events in root meristem growth

(2010) E. Scacchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of preprocambial cell state acquisition by auxin signaling in Arabidopsis leaves

(2009) T. J. Donner et al.   DEVELOPMENT

DORNROSCHEN is a direct target of the auxin response factor MONOPTEROS in the Arabidopsis embryo

(2009) M. Cole et al.   DEVELOPMENT

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis

(2009) Yoshiharu Y. Yamamoto et al.   PLANT JOURNAL

Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis

(2008) Ivan A. Paponov et al.   Molecular Plant

Transcriptional control of human p53-regulated genes

(2008) Todd Riley et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

TOPLESS Mediates Auxin-Dependent Transcriptional Repression During Arabidopsis Embryogenesis

(2008) H. Szemenyei et al.   SCIENCE