Conservation analysis of the CydX protein yields insights into small protein identification and evolution

Small Proteins Can No Longer Be Ignored

(2014) Gisela Storz et al.   Annual Review of Biochemistry

Cytochrome bd oxidase and bacterial tolerance to oxidative and nitrosative stress

(2014) Alessandro Giuffrè et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Subunit CydX ofEscherichia colicytochromebdubiquinol oxidase is essential for assembly and stability of the di-heme active site

(2014) Jo Hoeser et al.   FEBS LETTERS

The Escherichia coli CydX Protein Is a Member of the CydAB Cytochrome bd Oxidase Complex and Is Required for Cytochrome bd Oxidase Activity

(2013) C. E. VanOrsdel et al.   JOURNAL OF BACTERIOLOGY

MISTIC: mutual information server to infer coevolution

(2013) Franco L. Simonetti et al.   NUCLEIC ACIDS RESEARCH

Brood Ball-Mediated Transmission of Microbiome Members in the Dung Beetle, Onthophagus taurus (Coleoptera: Scarabaeidae)

(2013) Anne M. Estes et al.   PLoS One

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Conserved small protein associates with the multidrug efflux pump AcrB and differentially affects antibiotic resistance

(2012) E. C. Hobbs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The cytochrome bd respiratory oxygen reductases

(2011) Vitaliy B. Borisov et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The Escherichia coli MntR Miniregulon Includes Genes Encoding a Small Protein and an Efflux Pump Required for Manganese Homeostasis

(2011) L. S. Waters et al.   JOURNAL OF BACTERIOLOGY

Membrane Localization of Small Proteins inEscherichia coli

(2011) Fanette Fontaine et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Geometric Cue for Protein Localization in a Bacterium

(2009) K. S. Ramamurthi et al.   SCIENCE

Small membrane proteins found by comparative genomics and ribosome binding site models

(2008) Matthew R. Hemm et al.   MOLECULAR MICROBIOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

A Systematic Survey of Mini-Proteins in Bacteria and Archaea

(2008) Fengyu Wang et al.   PLoS One

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology

A simple, fast, and accurate method of phylogenomic inference

(2008) Martin Wu et al.   GENOME BIOLOGY