Predicting the fungal CUG codon translation with Bagheera

Comparative genomics of emerging pathogens in the Candida glabrata clade

(2013) Toni Gabaldón et al.   BMC GENOMICS

The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies

(2013) K. Hoffmann et al.   PERSOONIA

Adding unaligned sequences into an existing alignment using MAFFT and LAST

(2012) Kazutaka Katoh et al.   BIOINFORMATICS

Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein

(2012) Björn Hammesfahr et al.   BMC EVOLUTIONARY BIOLOGY

Relationships among genera of theSaccharomycotina(Ascomycota) from multigene phylogenetic analysis of type species

(2012) Cletus P. Kurtzman et al.   FEMS YEAST RESEARCH

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

A holistic phylogeny of the coronin gene family reveals an ancient origin of the tandem-coronin, defines a new subfamily, and predicts protein function

(2011) Christian Eckert et al.   BMC EVOLUTIONARY BIOLOGY

A multigene phylogeny of Olpidium and its implications for early fungal evolution

(2011) Satoshi Sekimoto et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus

(2010) Cletus P. Kurtzman   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

SeqAn An efficient, generic C++ library for sequence analysis

(2008) Andreas Döring et al.   BMC BIOINFORMATICS

Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

(2008) Oliver Keller et al.   BMC BIOINFORMATICS

WebScipio: An online tool for the determination of gene structures using protein sequences

(2008) Florian Odronitz et al.   BMC GENOMICS

Re-examining the phylogeny of clinically relevant Candida species and allied genera based on multigene analyses

(2008) Clement K.M. Tsui et al.   FEMS YEAST RESEARCH