Identification of conserved and polymorphic STRs for personal genomes

lobSTR: A short tandem repeat profiler for personal genomes

(2012) Melissa Gymrek et al.   GENOME RESEARCH

Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis

(2012) Sophie Schbath et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

De novo assembly and genotyping of variants using colored de Bruijn graphs

(2012) Zamin Iqbal et al.   NATURE GENETICS

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

(2011) Anna W Santure et al.   BMC GENOMICS

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

(2011) Wenyu Zhang et al.   PLoS One

A Novel Approach for Mining Polymorphic Microsatellite Markers In Silico

(2011) Joseph I. Hoffman et al.   PLoS One

Fast and Cost-Effective Mining of Microsatellite Markers Using NGS Technology: An Example of a Korean Water Deer Hydropotes inermis argyropus

(2011) Jeong-Nam Yu et al.   PLoS One

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects

(2009) Emese Meglécz et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Genome-based polymorphic microsatellite development and validation in the mosquito Aedes aegypti and application to population genetics in Haiti

(2009) Diane D Lovin et al.   BMC GENOMICS

Detecting short tandem repeats from genome data: opening the software black box

(2008) A. Merkel et al.   BRIEFINGS IN BIOINFORMATICS

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS