Identification of candidate risk gene variations by whole-genome sequence analysis of four rat strains commonly used in inflammation research

Common Genetic Determinants of Uveitis Shared with Other Autoimmune Disorders

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Vra4 Congenic Rats with Allelic Differences in the Class II Transactivator Gene Display Altered Susceptibility to Experimental Autoimmune Encephalomyelitis

(2014) K. Harnesk et al.   JOURNAL OF IMMUNOLOGY

Combined sequence-based and genetic mapping analysis of complex traits in outbred rats

(2013) Amelie Baud et al.   NATURE GENETICS

Positioning of a Polymorphic Quantitative Trait Nucleotide in the Ncf1 Gene Controlling Oxidative Burst Response and Arthritis Severity in Rats

(2011) Malin Hultqvist et al.   ANTIOXIDANTS & REDOX SIGNALING

Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis

(2011) Stephen Sawcer et al.   NATURE

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

Finemapping of the arthritis QTL Pia7 reveals co-localization with Oia2 and the APLEC locus

(2010) C Rintisch et al.   GENES AND IMMUNITY

RGMA and IL21R show association with experimental inflammation and multiple sclerosis

(2010) R Nohra et al.   GENES AND IMMUNITY

The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance

(2010) S. S. Atanur et al.   GENOME RESEARCH

IL-22RA2 Associates with Multiple Sclerosis and Macrophage Effector Mechanisms in Experimental Neuroinflammation

(2010) A. D. Beyeen et al.   JOURNAL OF IMMUNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Multiple loci comprising immune-related genes regulate experimental neuroinflammation

(2009) M Marta et al.   GENES AND IMMUNITY

Genetic variants of CC chemokine genes in experimental autoimmune encephalomyelitis, multiple sclerosis and rheumatoid arthritis

(2009) J Öckinger et al.   GENES AND IMMUNITY

High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues

(2009) G.-J. Huang et al.   GENOME RESEARCH

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Alternative Splicing and Transcriptome Profiling of Experimental Autoimmune Encephalomyelitis Using Genome-Wide Exon Arrays

(2009) Alan Gillett et al.   PLoS One

Definition of arthritis candidate risk genes by combining rat linkage-mapping results with human case-control association data

(2008) L Backdahl et al.   ANNALS OF THE RHEUMATIC DISEASES

Profound and paradoxical impact on arthritis and autoimmunity of the rat antigen-presenting lectin-like receptor complex

(2008) Jian Ping Guo et al.   ARTHRITIS AND RHEUMATISM

DA rats from two colonies differ genetically and in their arthritis susceptibility

(2008) Carola Rintisch et al.   MAMMALIAN GENOME

Distribution and functional impact of DNA copy number variation in the rat

(2008) Victor Guryev et al.   NATURE GENETICS

SNP and haplotype mapping for genetic analysis in the rat

(2008) Kathrin Saar et al.   NATURE GENETICS

Positional cloning of the Igl genes controlling rheumatoid factor production and allergic bronchitis in rats

(2008) C. Rintisch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defining the Role of the MHC in Autoimmunity: A Review and Pooled Analysis

(2008) Michelle M. A. Fernando et al.   PLoS Genetics