A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery

RNA-seq and microarray complement each other in transcriptome profiling

(2012) Sunitha Kogenaru et al.   BMC GENOMICS

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

(2012) Brian J Haas et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda

(2011) Joost J van Soest et al.   BMC IMMUNOLOGY

The Spectrum of Infections in Catheter-Dependent Hemodialysis Patients

(2011) Y. Al-Solaiman et al.   Clinical Journal of the American Society of Nephrology

Host-Pathogen Interactions Made Transparent with the Zebrafish Model

(2011) Annemarie H. Meijer et al.   CURRENT DRUG TARGETS

A High-Throughput Screen for Tuberculosis Progression

(2011) Ralph Carvalho et al.   PLoS One

Pathogenesis of implant-associated infection: the role of the host

(2011) Werner Zimmerli et al.   Seminars in Immunopathology

Macrophage-specific gene functions in Spi1-directed innate immunity

(2010) A. Zakrzewska et al.   BLOOD

Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection

(2010) Anita Ordas et al.   FISH & SHELLFISH IMMUNOLOGY

Burkholderia cenocepacia Creates an Intramacrophage Replication Niche in Zebrafish Embryos, Followed by Bacterial Dissemination and Establishment of Systemic Infection

(2010) A. C. Vergunst et al.   INFECTION AND IMMUNITY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The influence of antibodies on Staphylococcus epidermidis adherence to polyvinylpyrrolidone-coated silicone elastomer in experimental biomaterial-associated infection in mice

(2009) Corine A.N. Broekhuizen et al.   BIOMATERIALS

Tissue around catheters is a niche for bacteria associated with medical device infection

(2009) Corine A. N. Broekhuizen et al.   CRITICAL CARE MEDICINE

A novel vertebrate model ofStaphylococcus aureusinfection reveals phagocyte-dependent resistance of zebrafish to non-host specialized pathogens

(2008) Tomasz K. Prajsnar et al.   CELLULAR MICROBIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Foreign body reaction to biomaterials

(2008) James M. Anderson et al.   SEMINARS IN IMMUNOLOGY

WikiPathways: Pathway Editing for the People

(2008) Alexander R Pico et al.   PLOS BIOLOGY