High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family

Implementing a cumulative supermatrix approach for a comprehensive phylogenetic study of the Teloschistales (Pezizomycotina, Ascomycota)

(2012) Ester Gaya et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome

(2011) Brendan P. Hodkinson et al.   ENVIRONMENTAL MICROBIOLOGY

Draft Genome Sequence of the Extremely Acidophilic Biomining Bacterium Acidithiobacillus thiooxidans ATCC 19377 Provides Insights into the Evolution of the Acidithiobacillus Genus

(2011) J. Valdes et al.   JOURNAL OF BACTERIOLOGY

Multiple Horizontal Gene Transfers of Ammonium Transporters/Ammonia Permeases from Prokaryotes to Eukaryotes: Toward a New Functional and Evolutionary Classification

(2011) T. R. McDonald et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ascospore discharge, germination and culture of fungal partners of tropical lichens, including the use of a novel culture technique

(2011) EK Sangvichien et al.   IMA Fungus

Function of human Rh based on structure of RhCG at 2.1 A

(2010) F. Gruswitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transport mechanisms in the ammonium transporter family

(2010) G. Lamoureux et al.   TRANSFUSION CLINIQUE ET BIOLOGIQUE

Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) Bacteria in Acid Mine Drainage Biofilms

(2009) D. S. A. Goltsman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

(2009) Jorge Valdés et al.   BMC GENOMICS

Draft Genome Sequence of the Extremely Acidophilic Bacterium Acidithiobacillus caldus ATCC 51756 Reveals Metabolic Versatility in the Genus Acidithiobacillus

(2009) J. Valdes et al.   JOURNAL OF BACTERIOLOGY

Phylogenomic Analysis Demonstrates a Pattern of Rare and Ancient Horizontal Gene Transfer between Plants and Fungi

(2009) T. A. Richards et al.   PLANT CELL

A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?

(2009) A. Elizabeth Arnold et al.   SYSTEMATIC BIOLOGY

The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits

(2009) Conrad L. Schoch et al.   SYSTEMATIC BIOLOGY

Acquisition of prokaryotic genes by fungal genomes

(2009) Marina Marcet-Houben et al.   TRENDS IN GENETICS

Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)

(2009) Alicia Clum et al.   Standards in Genomic Sciences

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH