Combined methylation mapping of 5mC and 5hmC during early embryonic stages in bovine

Inhibition ofMspI cleavage activity by hydroxymethylation of the CpG site: A concern for DNA modification studies using restriction endonucleases

(2012) Kenji Ichiyanagi   Epigenetics

A unique regulatory phase of DNA methylation in the early mammalian embryo

(2012) Zachary D. Smith et al.   NATURE

The GLIB technique for genome-wide mapping of 5-hydroxymethylcytosine

(2012) William A Pastor et al.   Nature Protocols

The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine

(2012) Yun Huang et al.   Nature Protocols

Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers

(2012) Aurélien A. Sérandour et al.   NUCLEIC ACIDS RESEARCH

Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution

(2012) M. J. Booth et al.   SCIENCE

DNA methylation analysis on satellite I region in blastocysts obtained from somatic cell cloned cattle

(2011) Ken-ichi YAMANAKA et al.   ANIMAL SCIENCE JOURNAL

The presence of 5-hydroxymethylcytosine at the gene promoter and not in the gene body negatively regulates gene expression

(2011) Julia Robertson et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Epigenetic programming: From gametes to blastocyst

(2011) Barbara F. Hales et al.   BIRTH DEFECTS RESEARCH PART A-CLINICAL AND MOLECULAR TERATOLOGY

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

(2011) Ping Liang et al.   BMC GENOMICS

Microarray assessment of methylation in individual mouse blastocyst stage embryos shows that in vitro culture may have widespread genomic effects

(2011) K. Wright et al.   HUMAN REPRODUCTION

DNA Methylation and Demethylation in Mammals

(2011) Zhao-xia Chen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-wide Regulation of 5hmC, 5mC, and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells

(2011) Yufei Xu et al.   MOLECULAR CELL

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

(2011) William A. Pastor et al.   NATURE

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

(2011) Gabriella Ficz et al.   NATURE

Dynamic CpG island methylation landscape in oocytes and preimplantation embryos

(2011) Sébastien A Smallwood et al.   NATURE GENETICS

A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA

(2011) Adam B. Robertson et al.   NUCLEIC ACIDS RESEARCH

Replication-Dependent Loss of 5-Hydroxymethylcytosine in Mouse Preimplantation Embryos

(2011) A. Inoue et al.   SCIENCE

Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA

(2011) Y.-F. He et al.   SCIENCE

5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells

(2011) Hume Stroud et al.   GENOME BIOLOGY

Endogenous Retroviruses in Trophoblast Differentiation and Placental Development

(2010) Sarah G. Black et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Quantification of Leukocyte Genomic 5-Methylcytosine Levels Reveals Epigenetic Plasticity in Healthy Adult Cloned Cattle

(2010) Béatrice de Montera et al.   Cellular Reprogramming

DNA Methylation Patterns Reflect Epigenetic Reprogramming in Bovine Embryos

(2010) Heiner Niemann et al.   Cellular Reprogramming

Changes in the DNA Methylation Status of Bovine Embryos from the Blastocyst to Elongated Stage Derived from Somatic Cell Nuclear Transfer

(2010) Ken Sawai et al.   Cellular Reprogramming

Whole-genome DNA methylation profiling using MethylCap-seq

(2010) Arie B. Brinkman et al.   METHODS

Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2

(2010) Myunggon Ko et al.   NATURE

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

(2010) Shinsuke Ito et al.   NATURE

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

(2010) R Alan Harris et al.   NATURE BIOTECHNOLOGY

Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA

(2010) Aleksandra Szwagierczak et al.   NUCLEIC ACIDS RESEARCH

Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine

(2010) Seung-Gi Jin et al.   NUCLEIC ACIDS RESEARCH

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

Epigenetic regulation of telomere chromatin integrity in pluripotent embryonic stem cells

(2010) Lee H Wong   Epigenomics

CpG islands - ‘A rough guide’

(2009) Robert S. Illingworth et al.   FEBS LETTERS

Finding the fifth base: Genome-wide sequencing of cytosine methylation

(2009) R. Lister et al.   GENOME RESEARCH

Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1

(2009) M. Tahiliani et al.   SCIENCE

Genome-wide DNA methylation profiling

(2009) Marina Bibikova et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Methods in DNA methylation profiling

(2009) Tao Zuo et al.   Epigenomics

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Aberrant epigenetic changes and gene expression in cloned cattle dying around birth

(2008) Li Lin et al.   BMC DEVELOPMENTAL BIOLOGY

Methylation perturbations in retroelements within the genome of a Mus interspecific hybrid correlate with double minute chromosome formation

(2008) J.D. Brown et al.   GENOMICS