Different patterns of gene structure divergence following gene duplication in Arabidopsis

MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans

(2013) Yupeng Wang et al.   BIOINFORMATICS

Locally Duplicated Ohnologs Evolve Faster Than Nonlocally Duplicated Ohnologs in Arabidopsis and Rice

(2013) Yupeng Wang   Genome Biology and Evolution

Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression inOryza sativa(rice)

(2013) Yupeng Wang et al.   NEW PHYTOLOGIST

Genome and gene duplications and gene expression divergence: a view from plants

(2012) Yupeng Wang et al.   Annals of the New York Academy of Sciences

Pervasive Indels and Their Evolutionary Dynamics after the Fish-Specific Genome Duplication

(2012) Baocheng Guo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergence of duplicate genes in exon-intron structure

(2012) G. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes

(2011) Yong E. Zhang et al.   BIOINFORMATICS

Evidence of function for conserved noncoding sequences in Arabidopsis thaliana

(2011) Jacob B. Spangler et al.   NEW PHYTOLOGIST

Different Gene Families in Arabidopsis thaliana Transposed in Different Epochs and at Different Frequencies throughout the Rosids

(2011) M. R. Woodhouse et al.   PLANT CELL

Two-Phase Resolution of Polyploidy in theArabidopsisMetabolic Network Gives Rise to Relative and Absolute Dosage Constraints

(2011) Michaël Bekaert et al.   PLANT CELL

Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms

(2011) Yupeng Wang et al.   PLoS One

Insights from the Comparison of Plant Genome Sequences

(2010) Andrew H. Paterson et al.   Annual Review of Plant Biology

Impact of Indels on the Flanking Regions in Structural Domains

(2010) Zheng Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Combined Effects of Amino Acid Substitutions and Indels on the Evolution of Structure within Protein Families

(2010) Zheng Zhang et al.   PLoS One

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

Divergence of exonic splicing elements after gene duplication and the impact on gene structures

(2009) Zhenguo Zhang et al.   GENOME BIOLOGY

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

(2008) M. Freeling et al.   GENOME RESEARCH

Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli

(2008) K. Hanada et al.   PLANT PHYSIOLOGY

Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy

(2008) R. Kafri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pervasive and Persistent Redundancy among Duplicated Genes in Yeast

(2008) E. Jedediah Dean et al.   PLoS Genetics