Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes

Transcriptome analysis of embryo maturation in maize

(2013) Keat Thomas Teoh et al.   BMC PLANT BIOLOGY

Insights into the molecular mechanism of RGL2-mediated inhibition of seed germination in Arabidopsis thaliana

(2012) Petra Stamm et al.   BMC PLANT BIOLOGY

Altered Starch Turnover in the Maternal Plant Has Major Effects on Arabidopsis Fruit Growth and Seed Composition

(2012) V. M. E. Andriotis et al.   PLANT PHYSIOLOGY

Transparent Testa16 Plays Multiple Roles in Plant Development and Is Involved in Lipid Synthesis and Embryo Development in Canola

(2012) W. Deng et al.   PLANT PHYSIOLOGY

Genome-Wide Analysis of the Complex Transcriptional Networks of Rice Developing Seeds

(2012) Liang-Jiao Xue et al.   PLoS One

Global Analysis of Gene Expression Profiles in Developing Physic Nut (Jatropha curcas L.) Seeds

(2012) Huawu Jiang et al.   PLoS One

A Large Insertion in bHLH Transcription Factor BrTT8 Resulting in Yellow Seed Coat in Brassica rapa

(2012) Xia Li et al.   PLoS One

A Proteomic Analysis of Seed Development in Brassica campestri L

(2012) Wenlan Li et al.   PLoS One

ABI4: versatile activator and repressor

(2012) Julia J. Wind et al.   TRENDS IN PLANT SCIENCE

Dissecting the regulatory architecture of gene expression QTLs

(2012) Daniel J Gaffney et al.   GENOME BIOLOGY

Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

(2011) Fred Y Peng et al.   BMC GENOMICS

Oil body proteins sequentially accumulate throughout seed development in Brassica napus

(2011) Pascale Jolivet et al.   JOURNAL OF PLANT PHYSIOLOGY

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

ABI4 Activates DGAT1 Expression in Arabidopsis Seedlings during Nitrogen Deficiency

(2011) Y. Yang et al.   PLANT PHYSIOLOGY

Transcriptional profiling and in silico analysis of Dof transcription factor gene family for understanding their regulation during seed development of rice Oryza sativa L.

(2010) Vikram Singh Gaur et al.   MOLECULAR BIOLOGY REPORTS

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

(2009) Mike J Mason et al.   BMC GENOMICS

Breeding response of transcript profiling in developing seeds of Brassica napus

(2009) Yaping Hu et al.   BMC MOLECULAR BIOLOGY

Comparative genomics of gene regulation—conservation and divergence of cis-regulatory information

(2009) Antonio CA Meireles-Filho et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Global Analysis of Gene Expression Profiles in Brassica napus Developing Seeds Reveals a Conserved Lipid Metabolism Regulation with Arabidopsis thaliana

(2009) Ya Niu et al.   Molecular Plant

An AP2-type transcription factor, WRINKLED1, ofArabidopsis thalianabinds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis

(2009) Kenichiro Maeo et al.   PLANT JOURNAL

Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development

(2009) R. Angelovici et al.   PLANT PHYSIOLOGY

fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control

(2008) Leping Li et al.   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Transcriptome analysis of grain development in hexaploid wheat

(2008) Yongfang Wan et al.   BMC GENOMICS

Genome-wide analysis of gene expression profiles during the kernel development of maize (Zea mays L.)

(2008) Xihui Liu et al.   GENOMICS

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis

(2008) Monica Santos-Mendoza et al.   PLANT JOURNAL

Geometric Interpretation of Gene Coexpression Network Analysis

(2008) Steve Horvath et al.   PLoS Computational Biology