Annotation of primate miRNAs by high throughput sequencing of small RNA libraries

Comparative and demographic analysis of orang-utan genomes

(2011) Devin P. Locke et al.   NATURE

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

The Reality of Pervasive Transcription

(2011) Michael B. Clark et al.   PLOS BIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain

(2010) M. Somel et al.   GENOME RESEARCH

Sequencing Primate Genomes: What Have We Learned?

(2009) Tomas Marques-Bonet et al.   Annual Review of Genomics and Human Genetics

Many roads to maturity: microRNA biogenesis pathways and their regulation

(2009) Julia Winter et al.   NATURE CELL BIOLOGY

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

(2009) Martin Kircher et al.   GENOME BIOLOGY

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

Identification of novel homologous microRNA genes in the rhesus macaque genome

(2008) Junming Yue et al.   BMC GENOMICS

Computational identification of novel microRNA homologs in the chimpanzee genome

(2008) Vesselin Baev et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY