High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade

Proteomic insights into the lifestyle of an environmentally relevant marine bacterium

(2011) Joseph Alexander Christie-Oleza et al.   ISME Journal

Comparative Proteogenomics of TwelveRoseobacterExoproteomes Reveals Different Adaptive Strategies Among These Marine Bacteria

(2011) Joseph Alexander Christie-Oleza et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteogenomics and systems biology: quest for the ultimate missing parts

(2010) Jean Armengaud   Expert Review of Proteomics

Structural and operational complexity of the Geobacter sulfurreducens genome

(2010) Y. Qiu et al.   GENOME RESEARCH

Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models

(2010) N. Borchert et al.   GENOME RESEARCH

Genome characteristics of a generalist marine bacterial lineage

(2010) Ryan J Newton et al.   ISME Journal

Genome Sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the Type Strains of Two Marine Roseobacter Genera

(2010) J. C. Thrash et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of Strain HTCC2083, a Novel Member of the Marine Clade Roseobacter

(2010) I. Kang et al.   JOURNAL OF BACTERIOLOGY

Genome Sequences of Oceanicola granulosus HTCC2516T and Oceanicola batsensis HTCC2597T

(2010) J. C. Thrash et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of the Marine Alphaproteobacterium HTCC2150, Assigned to the Roseobacter Clade

(2010) I. Kang et al.   JOURNAL OF BACTERIOLOGY

Functional Characterization and High-Throughput Proteomic Analysis of Interrupted Genes in the ArchaeonSulfolobus solfataricus

(2010) Beatrice Cobucci-Ponzano et al.   JOURNAL OF PROTEOME RESEARCH

In-Depth Analysis of Exoproteomes from Marine Bacteria by Shotgun Liquid Chromatography-Tandem Mass Spectrometry: the Ruegeria pomeroyi DSS-3 Case-Study

(2010) Joseph Alexander Christie-Oleza et al.   Marine Drugs

Expanding the Known Repertoire of Virulence Factors Produced byBacillus cereusthrough Early Secretome Profiling in Three Redox Conditions

(2010) Gérémy Clair et al.   MOLECULAR & CELLULAR PROTEOMICS

Generating and navigating proteome maps using mass spectrometry

(2010) Christian H. Ahrens et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa

(2009) Véronique Dupierris et al.   BIOINFORMATICS

A perfect genome annotation is within reach with the proteomics and genomics alliance

(2009) Jean Armengaud   CURRENT OPINION IN MICROBIOLOGY

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea

(2009) Irene Wagner-Döbler et al.   ISME Journal

Proteomics-based Refinement ofDeinococcus desertiGenome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons

(2009) Mathieu Baudet et al.   MOLECULAR & CELLULAR PROTEOMICS

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

(2009) Matthias Gstaiger et al.   NATURE REVIEWS GENETICS

Alliance of Proteomics and Genomics to Unravel the Specificities of Sahara Bacterium Deinococcus deserti

(2009) Arjan de Groot et al.   PLoS Genetics

Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea

(2009) Yvan Zivanovic et al.   GENOME BIOLOGY

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

(2008) N. Gupta et al.   GENOME RESEARCH

Bacterial carbon processing by generalist species in the coastal ocean

(2008) Xiaozhen Mou et al.   NATURE

Transterm: a database to aid the analysis of regulatory sequences in mRNAs

(2008) G. H. Jacobs et al.   NUCLEIC ACIDS RESEARCH

Annotating genomes with massive-scale RNA sequencing

(2008) France Denoeud et al.   GENOME BIOLOGY