Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny

Cassis: detection of genomic rearrangement breakpoints

(2010) C. Baudet et al.   BIOINFORMATICS

Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide

(2010) Marco Botta et al.   Molecular Systems Biology

Comparative Analysis of DNA Replication Timing Reveals Conserved Large-Scale Chromosomal Architecture

(2010) Eitan Yaffe et al.   PLoS Genetics

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

(2009) Claire Lemaitre et al.   BMC GENOMICS

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

(2009) Stefan Schoenfelder et al.   NATURE GENETICS

The emerging role of nuclear architecture in DNA repair and genome maintenance

(2009) Tom Misteli et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Precise detection of rearrangement breakpoints in mammalian chromosomes

(2008) Claire Lemaitre et al.   BMC BIOINFORMATICS

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH