Characterization of RNase MRP RNA and novel snoRNAs from Giardia intestinalis and Trichomonas vaginalis

Gene expression in the unicellular eukaryote Trichomonas vaginalis

(2011) Alias Smith et al.   RESEARCH IN MICROBIOLOGY

Conserved and variable domains of RNase MRP RNA

(2010) Marcela Dávila López et al.   RNA Biology

Families of H/ACA ncRNA molecules in Trypanosomatids

(2010) Tirza Doniger et al.   RNA Biology

Ancestral RNA: The RNA biology of the eukaryotic ancestor

(2010) Lesley J. Collins et al.   RNA Biology

The RNase P family

(2010) J. Christopher Ellis et al.   RNA Biology

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Genome-wide computational identification of microRNAs and their targets in the deep-branching eukaryote Giardia lamblia

(2009) Yan-Qiong Zhang et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

High Throughput Genome-Wide Survey of Small RNAs from the Parasitic Protists Giardia intestinalis and Trichomonas vaginalis

(2009) Xiaowei (Sylvia) Chen et al.   Genome Biology and Evolution

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Identification of microRNA in the protist Trichomonas vaginalis

(2009) Wei-Chen Lin et al.   GENOMICS

Eukaryotic snoRNAs: A paradigm for gene expression flexibility

(2009) Giorgio Dieci et al.   GENOMICS

Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations

(2009) T. Kawashima et al.   RNA

The nuclear experience of CPEB: Implications for RNA processing and translational control

(2009) C.-L. Lin et al.   RNA

The RNA infrastructure: dark matter of the eukaryotic cell?

(2009) Lesley J. Collins et al.   TRENDS IN GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts

(2008) Minghui Jiang et al.   BMC BIOINFORMATICS

Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes

(2008) Inna Myslyuk et al.   BMC BIOINFORMATICS

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Computational Identification of Four Spliceosomal snRNAs from the Deep-Branching Eukaryote Giardia intestinalis

(2008) Xiaowei Sylvia Chen et al.   PLoS One

Spliceosomal snRNAs in the unicellular eukaryote Trichomonas vaginalis are structurally conserved but lack a 5'-cap structure

(2008) A. Simoes-Barbosa et al.   RNA

snoRNA, a Novel Precursor of microRNA in Giardia lamblia

(2008) Ashesh A. Saraiya et al.   PLoS Pathogens