Synonymous site conservation in the HIV-1 genome

Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses

(2011) Tong Zhou et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary Models Accounting for Layers of Selection in Protein-Coding Genes and their Impact on the Inference of Positive Selection

(2011) N. D. Rubinstein et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting Positive and Purifying Selection at Synonymous Sites in Yeast and Worm

(2010) T. Zhou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Translation efficiency is determined by both codon bias and folding energy

(2010) Tamir Tuller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes

(2010) Wanjun Gu et al.   PLoS Computational Biology

Evolutionary Fingerprinting of Genes

(2009) S. L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu

(2008) Stuart J. D. Neil et al.   NATURE

Quantitative Effect of Suboptimal Codon Usage on Translational Efficiency of mRNA Encoding HIV-1 gag in Intact T Cells

(2008) Kholiswa C. Ngumbela et al.   PLoS One

The Trouble with Sliding Windows and the Selective Pressure in BRCA1

(2008) Karl Schmid et al.   PLoS One

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

(2008) Nobubelo K Ngandu et al.   Virology Journal