Evolution of complete proteomes: guanine-cytosine pressure, phylogeny and environmental influences blend the proteomic architecture

The amino acid composition of proteins from anaerobic halophilic bacteria of the order Halanaerobiales

(2012) Rahel Elevi Bardavid et al.   EXTREMOPHILES

Genomic characteristics comparisons of 12 food-related filamentous fungi in tRNA gene set, codon usage and amino acid composition

(2012) Wanping Chen et al.   GENE

Metabolic and Translational Efficiency in Microbial Organisms

(2012) Douglas W. Raiford et al.   JOURNAL OF MOLECULAR EVOLUTION

Proteomic Properties Reveal Phyloecological Clusters of Archaea

(2012) Nela Nikolic et al.   PLoS One

Proteome sequence features carry signatures of the environmental niche of prokaryotes

(2011) Zlatko Smole et al.   BMC EVOLUTIONARY BIOLOGY

GC content-independent amino acid patterns in Bacteria and Archaea

(2011) Andre Schmidt et al.   JOURNAL OF BASIC MICROBIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Across Bacterial Phyla, Distantly-Related Genomes with Similar Genomic GC Content Have Similar Patterns of Amino Acid Usage

(2011) John Lightfield et al.   PLoS One

Amino acid composition in endothermic vertebrates is biased in the same direction as in thermophilic prokaryotes

(2010) Guang-Zhong Wang et al.   BMC EVOLUTIONARY BIOLOGY

Amino Acid Compositional Shifts During Streptophyte Transitions to Terrestrial Habitats

(2010) Richard W. Jobson et al.   JOURNAL OF MOLECULAR EVOLUTION

A colorful origin for the genetic code: Information theory, statistical mechanics and the emergence of molecular codes

(2010) Tsvi Tlusty   Physics of Life Reviews

Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast

(2010) Michael D. Barton et al.   PLoS One

Beyond the Genome: genomics research ten years after the human genome sequence

(2010) Amanda M Casto et al.   GENOME BIOLOGY

Do Amino Acid Biosynthetic Costs Constrain Protein Evolution in Saccharomyces cerevisiae?

(2008) Douglas W. Raiford et al.   JOURNAL OF MOLECULAR EVOLUTION

An Assessment of the Impacts of Molecular Oxygen on the Evolution of Proteomes

(2008) S. Vieira-Silva et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gaining and losing the thermophilic adaptation in prokaryotes

(2007) Pere Puigbò et al.   TRENDS IN GENETICS