Inferring the evolutionary histories of divergences in Hylobates and Nomascus gibbons through multilocus sequence data

A comparative analysis of Y chromosome and mtDNA phylogenies of the Hylobates gibbons

(2012) Yi-Chiao Chan et al.   BMC EVOLUTIONARY BIOLOGY

A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons

(2012) O. Capozzi et al.   GENOME RESEARCH

An Alu-Based Phylogeny of Gibbons (Hylobatidae)

(2012) Thomas J. Meyer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pleistocene speciation with and without gene flow inEuphaeadamselflies of subtropical and tropical East Asian islands

(2012) YAT-HUNG LEE et al.   MOLECULAR ECOLOGY

Species tree of a recent radiation: The subfamily Delphininae (Cetacea, Mammalia)

(2012) Ana R. Amaral et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Insights into hominid evolution from the gorilla genome sequence

(2012) Aylwyn Scally et al.   NATURE

Concordance between vocal and genetic diversity in crested gibbons

(2011) Van Ngoc Thinh et al.   BMC EVOLUTIONARY BIOLOGY

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

(2011) A. Hobolth et al.   GENOME RESEARCH

Patterns of Genetic Variation Within and Between Gibbon Species

(2011) S. K. Kim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multilocus analysis of the evolutionary dynamics of rainforest bird populations in Southeast Asia

(2011) HAW CHUAN LIM et al.   MOLECULAR ECOLOGY

Speciation in the White-breasted Nuthatch (Sitta carolinensis): a multilocus perspective

(2011) V. WOODY WALSTROM et al.   MOLECULAR ECOLOGY

Genetic structure in a dynamic baboon hybrid zone corroborates behavioural observations in a hybrid population

(2011) M. J. E. CHARPENTIER et al.   MOLECULAR ECOLOGY

Comparative and demographic analysis of orang-utan genomes

(2011) Devin P. Locke et al.   NATURE

A comparative study of crested gibbons (Nomascus)

(2010) Alan R. Mootnick et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Phylogeny and distribution of crested gibbons (genus Nomascus) based on mitochondrial cytochrome b gene sequence data

(2010) Van Ngoc Thinh et al.   AMERICAN JOURNAL OF PRIMATOLOGY

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Phylogenetic and coalescent analysis of three loci suggest that the Water Rail is divisible into two species, Rallus aquaticus and R. indicus

(2010) Erika S Tavares et al.   BMC EVOLUTIONARY BIOLOGY

Mitochondrial evidence for multiple radiations in the evolutionary history of small apes

(2010) Van NGOC Thinh et al.   BMC EVOLUTIONARY BIOLOGY

HISTORICAL DIVERGENCE AND GENE FLOW: COALESCENT ANALYSES OF MITOCHONDRIAL, AUTOSOMAL AND SEX-LINKED LOCI IN PASSERINA BUNTINGS

(2010) Matthew D. Carling et al.   EVOLUTION

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Phylogenetic relationships and divergence dates of the whole mitochondrial genome sequences among three gibbon genera

(2010) Kazunari Matsudaira et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Unresolved molecular phylogenies of gibbons and siamangs (Family: Hylobatidae) based on mitochondrial, Y-linked, and X-linked loci indicate a rapid Miocene radiation or sudden vicariance event

(2010) H. Israfil et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial Genome Sequences Effectively Reveal the Phylogeny of Hylobates Gibbons

(2010) Yi-Chiao Chan et al.   PLoS One

Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data

(2010) Richard D. Wilkinson et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Ancestral Population Genomics: The Coalescent Hidden Markov Model Approach

(2009) J. Y. Dutheil et al.   GENETICS

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Divergence of Chimpanzee Species and Subspecies as Revealed in Multipopulation Isolation-with-Migration Analyses

(2009) J. Hey   MOLECULAR BIOLOGY AND EVOLUTION

Divergence population genetic analysis of hybridization between rhesus and cynomolgus macaques

(2009) LAURIE S. STEVISON et al.   MOLECULAR ECOLOGY

seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments

(2009) J-F. FLOT   Molecular Ecology Resources

Harnessing genomics for evolutionary insights

(2009) Antonis Rokas et al.   TRENDS IN ECOLOGY & EVOLUTION

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

(2009) Martin Kircher et al.   GENOME BIOLOGY

BEST: Bayesian estimation of species trees under the coalescent model

(2008) L. Liu   BIOINFORMATICS

ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA

(2008) Liang Liu et al.   EVOLUTION

Molecular phylogeny and evolution of prosimians based on complete sequences of mitochondrial DNAs

(2008) Atsushi Matsui et al.   GENE

Tracking the complex flow of chromosome rearrangements from the Hominoidea Ancestor to extant Hylobates and Nomascus Gibbons by high-resolution synteny mapping

(2008) D. Misceo et al.   GENOME RESEARCH

Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes

(2008) ARMANDO GERALDES et al.   MOLECULAR ECOLOGY

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY