Parallel reduction in expression, but no loss of functional constraint, in two opsin paralogs within cave populations of Gammarus minus (Crustacea: Amphipoda)

Rapid evolution of troglomorphic characters suggests selection rather than neutral mutation as a driver of eye reduction in cave crabs

(2013) S. Klaus et al.   Biology Letters

Drosophila Auditory Organ Genes and Genetic Hearing Defects

(2012) Pingkalai R. Senthilan et al.   CELL

Evolution of albinism in cave planthoppers by a convergent defect in the first step of melanin biosynthesis

(2012) Helena Bilandžija et al.   EVOLUTION & DEVELOPMENT

Parallel reduction in expression of the eye development gene hedgehog in separately derived cave populations of the amphipod Gammarus minus

(2012) A. C. ASPIRAS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Encephalic photoreception and phototactic response in the troglobiont Somalian blind cavefish Phreatichthys andruzzii

(2012) E. E. Tarttelin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Phototransduction and clock gene expression in the troglobiont beetle Ptomaphagus hirtus of Mammoth cave

(2011) M. Friedrich et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Blind Circadian Clock in Cavefish Reveals that Opsins Mediate Peripheral Clock Photoreception

(2011) Nicola Cavallari et al.   PLOS BIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Molecular genetic variation and population structure in morphologically differentiated cave and surface populations of the freshwater amphipodGammarus minus

(2009) DAVID B. CARLINI et al.   MOLECULAR ECOLOGY

Molecular diversity of visual pigments in Stomatopoda (Crustacea)

(2009) MEGAN L. PORTER et al.   VISUAL NEUROSCIENCE

Energy limitation as a selective pressure on the evolution of sensory systems

(2008) J. E. Niven et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites

(2008) R. Egea et al.   NUCLEIC ACIDS RESEARCH

The proPO-system: pros and cons for its role in invertebrate immunity

(2008) Lage Cerenius et al.   TRENDS IN IMMUNOLOGY