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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

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Paraphyly of organelle DNAs in Cycas Sect. Asiorientales due to ancient ancestral polymorphisms

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Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reticulate evolution and incomplete lineage sorting among the ponderosa pines

(2009) Ann Willyard et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

(2008) Kazutaka Katoh et al.   BMC BIOINFORMATICS

Chloroplast phylogeography of Dipentodon (Dipentodontaceae) in southwest China and northern Vietnam

(2008) QING-JUN YUAN et al.   MOLECULAR ECOLOGY

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

(2008) A ECKERT et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model

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