Global gene expression of the inner cell mass and trophectoderm of the bovine blastocyst

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array

(2012) Yali Hou et al.   BMC GENOMICS

RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts

(2012) Ashley M Driver et al.   BMC GENOMICS

In Vitro Culture of Mouse Embryos Reduces Differential Gene Expression Between Inner Cell Mass and Trophectoderm

(2012) G. Giritharan et al.   Reproductive Sciences

Importance of culture conditions during the morula-to-blastocyst period on capacity of inner cell-mass cells of bovine blastocysts for establishment of self-renewing pluripotent cells

(2012) M. Ozawa et al.   THERIOGENOLOGY

Transcriptomic Signature of Trophoblast Differentiation in a Human Embryonic Stem Cell Model1

(2011) Melanie Marchand et al.   BIOLOGY OF REPRODUCTION

Reprogramming to pluripotency: stepwise resetting of the epigenetic landscape

(2011) Bernadett Papp et al.   CELL RESEARCH

Elf5 regulation in the Trophectoderm

(2011) David J. Pearton et al.   DEVELOPMENTAL BIOLOGY

Trophectoderm Lineage Determination in Cattle

(2011) Debra K. Berg et al.   DEVELOPMENTAL CELL

Oct4 kinetics predict cell lineage patterning in the early mammalian embryo

(2011) Nicolas Plachta et al.   NATURE CELL BIOLOGY

iPath2.0: interactive pathway explorer

(2011) Takuji Yamada et al.   NUCLEIC ACIDS RESEARCH

Expression and localization of DLX3, PPARG and SP1 in bovine trophoblast during binucleated cell differentiation

(2011) S.A. Degrelle et al.   PLACENTA

Fibroblast growth factor requirements for in vitro development of bovine embryos

(2011) Sarah D. Fields et al.   THERIOGENOLOGY

Establishing Three Blastocyst Lineages--Then What?

(2010) M. Gasperowicz et al.   BIOLOGY OF REPRODUCTION

GABP controls a critical transcription regulatory module that is essential for maintenance and differentiation of hematopoietic stem/progenitor cells

(2010) S. Yu et al.   BLOOD

Molecular basis of the first cell fate determination in mouse embryogenesis

(2010) Lingyi Chen et al.   CELL RESEARCH

Nuclear Transfer-Specific Defects Are Not Apparent during the Second Week of Embryogenesis in Cattle

(2010) Craig S. Smith et al.   Cellular Reprogramming

DNA Methylation Patterns Reflect Epigenetic Reprogramming in Bovine Embryos

(2010) Heiner Niemann et al.   Cellular Reprogramming

Aberrant Expression Patterns of Genes Involved in Segregation of Inner Cell Mass and Trophectoderm Lineages in Bovine Embryos Derived from Somatic Cell Nuclear Transfer

(2010) Takashi Fujii et al.   Cellular Reprogramming

Structure and Function of Mammalian DNA Methyltransferases

(2010) Renata Zofia Jurkowska et al.   CHEMBIOCHEM

FGF signal-dependent segregation of primitive endoderm and epiblast in the mouse blastocyst

(2010) Y. Yamanaka et al.   DEVELOPMENT

A novel method for purification of inner cell mass and trophectoderm cells from blastocysts using magnetic activated cell sorting

(2010) Manabu Ozawa et al.   FERTILITY AND STERILITY

Intracellular cathepsin B activity is inversely correlated with the quality and developmental competence of bovine preimplantation embryos

(2010) A.Z. Balboula et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

Origin and formation of the first two distinct cell types of the inner cell mass in the mouse embryo

(2010) S. A. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell cDNA high-density oligonucleotide microarray analysis: detection of individual cell types and properties in complex biological processes

(2010) Mitinori Saitou et al.   REPRODUCTIVE BIOMEDICINE ONLINE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Balancing dormant and self-renewing hematopoietic stem cells

(2009) Anne Wilson et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse

(2009) J. Rossant et al.   DEVELOPMENT

Active cell movements coupled to positional induction are involved in lineage segregation in the mouse blastocyst

(2009) Sigolène M. Meilhac et al.   DEVELOPMENTAL BIOLOGY

Gene expression profiles of human inner cell mass cells and embryonic stem cells

(2009) Renee A. Reijo Pera et al.   DIFFERENTIATION

Colony-Stimulating Factor 2 (CSF-2) Improves Development and Posttransfer Survival of Bovine Embryos Producedin Vitro

(2009) Bárbara Loureiro et al.   ENDOCRINOLOGY

Cellular and molecular regulation of mammalian blastocyst hatching

(2009) Polani B. Seshagiri et al.   JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Establishment of trophectoderm and inner cell mass lineages in the mouse embryo

(2009) Yusuke Marikawa et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

(2009) Elodie Portales-Casamar et al.   NUCLEIC ACIDS RESEARCH

BFAST: An Alignment Tool for Large Scale Genome Resequencing

(2009) Nils Homer et al.   PLoS One

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation

(2008) E. Wingender   BRIEFINGS IN BIOINFORMATICS

The Growth Factor Environment Defines Distinct Pluripotent Ground States in Novel Blastocyst-Derived Stem Cells

(2008) Yu-Fen Chou et al.   CELL

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Polycomb gene expression and histone H3 lysine 27 trimethylation changes during bovine preimplantation development

(2008) Pablo J Ross et al.   REPRODUCTION

Blastocyst elongation, trophoblastic differentiation, and embryonic pattern formation

(2008) LeAnn Blomberg et al.   REPRODUCTION

Expression of genes involved in early cell fate decisions in human embryos and their regulation by growth factors

(2008) S J Kimber et al.   REPRODUCTION

Tight junction biogenesis during early development

(2007) Judith J. Eckert et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Interferons and the maternal–conceptus dialog in mammals

(2007) R. Michael Roberts et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY