Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules

Identification of Subtypes in Human Epidermal Growth Factor Receptor 2–Positive Breast Cancer Reveals a Gene Signature Prognostic of Outcome

(2010) Johan Staaf et al.   JOURNAL OF CLINICAL ONCOLOGY

Knowledge driven decomposition of tumor expression profiles

(2009) Martin H van Vliet et al.   BMC BIOINFORMATICS

Metastasis-Promoting Immunity: When T Cells Turn to the Dark Side

(2009) Drew Pardoll   CANCER CELL

CD4+ T Cells Regulate Pulmonary Metastasis of Mammary Carcinomas by Enhancing Protumor Properties of Macrophages

(2009) David G. DeNardo et al.   CANCER CELL

A Genomic Strategy to Elucidate Modules of Oncogenic Pathway Signaling Networks

(2009) Jeffrey T. Chang et al.   MOLECULAR CELL

Disease signatures are robust across tissues and experiments

(2009) Joel T Dudley et al.   Molecular Systems Biology

An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer

(2008) Min Xu et al.   BMC GENOMICS

Effects of infiltrating lymphocytes and estrogen receptor on gene expression and prognosis in breast cancer

(2008) Alberto Calabrò et al.   BREAST CANCER RESEARCH AND TREATMENT

The Humoral Immune System Has a Key Prognostic Impact in Node-Negative Breast Cancer

(2008) M. Schmidt et al.   CANCER RESEARCH

Biological Processes Associated with Breast Cancer Clinical Outcome Depend on the Molecular Subtypes

(2008) C. Desmedt et al.   CLINICAL CANCER RESEARCH

Stromal gene expression predicts clinical outcome in breast cancer

(2008) Greg Finak et al.   NATURE MEDICINE

Analysis of the structure of complex networks at different resolution levels

(2008) A Arenas et al.   NEW JOURNAL OF PHYSICS

PI3K pathway alterations in cancer: variations on a theme

(2008) T L Yuan et al.   ONCOGENE

Age-Specific Differences in Oncogenic Pathway Deregulation Seen in Human Breast Tumors

(2008) Carey K. Anders et al.   PLoS One

Inferring Pathway Activity toward Precise Disease Classification

(2008) Eunjung Lee et al.   PLoS Computational Biology