Compromised RNA polymerase III complex assembly leads to local alterations of intergenic RNA polymerase II transcription in Saccharomyces cerevisiae

Total Synthesis of a Functional Designer Eukaryotic Chromosome

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A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes

(2013) Yatendra Kumar et al.   BMC GENOMICS

Intergenic Transcriptional Interference Is Blocked by RNA Polymerase III Transcription Factor TFIIIB in Saccharomyces cerevisiae

(2013) A. Korde et al.   GENETICS

Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast

(2013) C. J. McManus et al.   GENOME RESEARCH

Global ‘bootprinting’ reveals the elastic architecture of the yeast TFIIIB–TFIIIC transcription complex in vivo

(2013) V. Nagarajavel et al.   NUCLEIC ACIDS RESEARCH

Extensive Transcript Diversity and Novel Upstream Open Reading Frame Regulation in Yeast

(2013) Karl Waern et al.   G3-Genes Genomes Genetics

Yeast RNA polymerase III transcription factors and effectors

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

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TFIIIC localizes budding yeast ETC sites to the nuclear periphery

(2012) Shin-ichiro Hiraga et al.   MOLECULAR BIOLOGY OF THE CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Human tRNA genes function as chromatin insulators

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RNA polymerase III transcription control elements: Themes and variations

(2011) Andrea Orioli et al.   GENE

Extra-transcriptional functions of RNA Polymerase III complexes: TFIIIC as a potential global chromatin bookmark

(2011) David Donze   GENE

A Comprehensive Genomic Binding Map of Gene and Chromatin Regulatory Proteins in Saccharomyces

(2011) Bryan J. Venters et al.   MOLECULAR CELL

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Autoregulation of an RNA polymerase II promoter by the RNA polymerase III transcription factor III C (TFIIIC) complex

(2011) R. A. Kleinschmidt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional consequences of bidirectional promoters

(2011) Wu Wei et al.   TRENDS IN GENETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome

(2010) Matthew D Sekedat et al.   Molecular Systems Biology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Bidirectional promoters generate pervasive transcription in yeast

(2009) Zhenyu Xu et al.   NATURE

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

(2009) Helen Neil et al.   NATURE

TFIIIC Binding Sites Function as both Heterochromatin Barriers and Chromatin Insulators inSaccharomyces cerevisiae

(2008) Tiffany A. Simms et al.   EUKARYOTIC CELL