Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss

Origin and evolution of spliceosomal introns

(2012) Igor B Rogozin et al.   Biology Direct

Retrotransposons

(2012) David J. Finnegan   CURRENT BIOLOGY

The abundance of processed pseudogenes derived from glycolytic genes is correlated with their expression level

(2012) Laura McDonell et al.   GENOME

Mechanisms of intron gain and loss in Drosophila

(2011) Paul Yenerall et al.   BMC EVOLUTIONARY BIOLOGY

Higher Intron Loss Rate in Arabidopsis thaliana Than A. lyrata Is Consistent with Stronger Selection for a Smaller Genome

(2011) J. A. Fawcett et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Role of Reverse Transcriptase in Intron Gain and Loss Mechanisms

(2011) Noa E. Cohen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli

(2011) C. Shee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes

(2011) Miklos Csuros et al.   PLoS Computational Biology

Evaluation of Models of the Mechanisms Underlying Intron Loss and Gain in Aspergillus Fungi

(2010) Lei-Ying Zhang et al.   JOURNAL OF MOLECULAR EVOLUTION

Role for topoisomerase 1 in transcription-associated mutagenesis in yeast

(2010) M. J. Lippert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topoisomerase 1 provokes the formation of short deletions in repeated sequences upon high transcription in Saccharomyces cerevisiae

(2010) T. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

(2010) F. Denoeud et al.   SCIENCE

DNA double-strand break repair and the evolution of intron density

(2010) Ashley Farlow et al.   TRENDS IN GENETICS

Noisy Splicing Drives mRNA Isoform Diversity in Human Cells

(2010) Joseph K. Pickrell et al.   PLoS Genetics

Nonsense-Mediated Decay Enables Intron Gain in Drosophila

(2010) Ashley Farlow et al.   PLoS Genetics

OrthoClusterDB: an online platform for synteny blocks

(2009) Man-Ping Ng et al.   BMC BIOINFORMATICS

Evolutionary Origin and Functions of Retrogene Introns

(2009) M. Fablet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of Ultrasmall Spliceosomal Introns in Highly Reduced Nuclear Genomes

(2009) C. H. Slamovits et al.   MOLECULAR BIOLOGY AND EVOLUTION

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

(2009) Caroline C. Friedel et al.   NUCLEIC ACIDS RESEARCH

Processed pseudogenes: the ‘fossilized footprints’ of past gene expression

(2009) Ondrej Podlaha et al.   TRENDS IN GENETICS

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

(2009) Suganthi Balasubramanian et al.   GENOME BIOLOGY

Exon definition as a potential negative force against intron losses in evolution

(2008) Deng-Ke Niu   Biology Direct

Evidence against the energetic cost hypothesis for the short introns in highly expressed genes

(2008) Yi-Fei Huang et al.   BMC EVOLUTIONARY BIOLOGY

Mechanisms of intron gain and loss in Cryptococcus

(2008) Thomas J Sharpton et al.   GENOME BIOLOGY

Investigation of Loss and Gain of Introns in the Compact Genomes of Pufferfishes (Fugu and Tetraodon)

(2007) Y.-H. Loh et al.   MOLECULAR BIOLOGY AND EVOLUTION