hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups

Modelling and visualizing fine-scale linkage disequilibrium structure

(2013) David Edwards   BMC BIOINFORMATICS

Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions

(2013) T Druet et al.   HEREDITY

Detection of identity by descent using next-generation whole genome sequencing data

(2012) Shu-Yi Su et al.   BMC BIOINFORMATICS

Technical note: Efficient parentage assignment and pedigree reconstruction with dense single nucleotide polymorphism data

(2011) B.J. Hayes   JOURNAL OF DAIRY SCIENCE

Haplotype phasing: existing methods and new developments

(2011) Sharon R. Browning et al.   NATURE REVIEWS GENETICS

Optimal algorithms for haplotype assembly from whole-genome sequence data

(2010) D. He et al.   BIOINFORMATICS

Accurate Prediction of Genetic Values for Complex Traits by Whole-Genome Resequencing

(2010) T. Meuwissen et al.   GENETICS