Detecting temporal protein complexes from dynamic protein-protein interaction networks

Inference of dynamic networks using time-course data

(2013) Y. Kim et al.   BRIEFINGS IN BIOINFORMATICS

Protein Complex Detection via Weighted Ensemble Clustering Based on Bayesian Nonnegative Matrix Factorization

(2013) Le Ou-Yang et al.   PLoS One

Detecting protein complexes from active protein interaction networks constructed with dynamic gene expression profiles

(2013) Qianghua Xiao et al.   Proteome Science

Genome-scale analysis of interaction dynamics reveals organization of biological networks

(2012) Jishnu Das et al.   BIOINFORMATICS

How networks change with time

(2012) Y. Park et al.   BIOINFORMATICS

Integrating external biological knowledge in the construction of regulatory networks from time-series expression data

(2012) Kenneth Lo et al.   BMC Systems Biology

Detecting overlapping protein complexes in protein-protein interaction networks

(2012) Tamás Nepusz et al.   NATURE METHODS

The BioGRID interaction database: 2013 update

(2012) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

Exploring Overlapping Functional Units with Various Structure in Protein Interaction Networks

(2012) Xiao-Fei Zhang et al.   PLoS One

Construction and application of dynamic protein interaction network based on time course gene expression data

(2012) Jianxin Wang et al.   PROTEOMICS

Multifunctional proteins revealed by overlapping clustering in protein interaction network

(2011) Emmanuelle Becker et al.   BIOINFORMATICS

MINE: Module Identification in Networks

(2011) Kahn Rhrissorrakrai et al.   BMC BIOINFORMATICS

SPICi: a fast clustering algorithm for large biological networks

(2010) Peng Jiang et al.   BIOINFORMATICS

Toward the dynamic interactome: it's about time

(2010) T. M. Przytycka et al.   BRIEFINGS IN BIOINFORMATICS

How and when should interactome-derived clusters be used to predict functional modules and protein function?

(2009) Jimin Song et al.   BIOINFORMATICS

A core-attachment based method to detect protein complexes in PPI networks

(2009) Min Wu et al.   BMC BIOINFORMATICS

Recovering time-varying networks of dependencies in social and biological studies

(2009) A. Ahmed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Up-to-date catalogues of yeast protein complexes

(2008) Shuye Pu et al.   NUCLEIC ACIDS RESEARCH

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE