SMITH: a LIMS for handling next-generation sequencing workflows

Galaxy LIMS for next-generation sequencing

(2013) J. Scholtalbers et al.   BIOINFORMATICS

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

NG6: Integrated next generation sequencing storage and processing environment

(2012) Jérôme Mariette et al.   BMC GENOMICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

The Wasp System: An open source environment for managing and analyzing genomic data

(2012) Andrew S. McLellan et al.   GENOMICS

openBIS: a flexible framework for managing and analyzing complex data in biology research

(2011) Angela Bauch et al.   BMC BIOINFORMATICS

SLIMS--a user-friendly sample operations and inventory management system for genotyping labs

(2010) T. Van Rossum et al.   BIOINFORMATICS

Ergatis: a web interface and scalable software system for bioinformatics workflows

(2010) J. Orvis et al.   BIOINFORMATICS

Next generation tools for genomic data generation, distribution, and visualization

(2010) David A Nix et al.   BMC BIOINFORMATICS

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS