PyTMs: a useful PyMOL plugin for modeling common post-translational modifications
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
PyTMs: a useful PyMOL plugin for modeling common post-translational modifications
Authors
Keywords
Post-translational modifications, PyMOL plugin, Structural bioinformatics, Modeling, Acetylation, Carbamylation, Citrullination, Oxidations, Malondialdehyde adducts, Nitration
Journal
BMC BIOINFORMATICS
Volume 15, Issue 1, Pages -
Publisher
Springer Nature
Online
2014-12-01
DOI
10.1186/s12859-014-0370-6
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Histone lysine methylation and chromatin replication
- (2014) Carlos Rivera et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Energy crisis: The role of oxidative phosphorylation in acute inflammation and sepsis
- (2014) Icksoo Lee et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- Incorporating post-translational modifications and unnatural amino acids into high-throughput modeling of protein structures
- (2014) Ken Nagata et al. BIOINFORMATICS
- Diethyl 4-(2-methoxyphenyl)-2,6-dimethyl-1,4-dihydropyridine-3,5-dicarboxylate
- (2013) Ke Wang et al. ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE
- Inhibition of peroxisomal hydroxypyruvate reductase (HPR1) by tyrosine nitration
- (2013) Francisco J. Corpas et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Natural antibodies of newborns recognize oxidative stress-related malondialdehyde acetaldehyde adducts on apoptotic cells and atherosclerotic plaques
- (2013) Chunguang Wang et al. INTERNATIONAL IMMUNOLOGY
- A molecular basis for the association of the HLA-DRB1 locus, citrullination, and rheumatoid arthritis
- (2013) Stephen W. Scally et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Mass spectrometry and redox proteomics: Applications in disease
- (2013) D. Allan Butterfield et al. MASS SPECTROMETRY REVIEWS
- The innate immune response to products of phospholipid peroxidation
- (2012) David Weismann et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Chemistry and Biology of Biomolecule Nitration
- (2012) Lyn H. Jones CHEMISTRY & BIOLOGY
- Lipidome analysis in multiple sclerosis reveals protein lipoxidative damage as a potential pathogenic mechanism
- (2012) Hugo Gonzalo et al. JOURNAL OF NEUROCHEMISTRY
- Amino acids: Chemistry, functionality and selected non-enzymatic post-translational modifications
- (2012) Rainer Bischoff et al. Journal of Proteomics
- Inflammation-Associated Nitrotyrosination Affects TCR Recognition through Reduced Stability and Alteration of the Molecular Surface of the MHC Complex
- (2012) Chaithanya Madhurantakam et al. PLoS One
- Hybrid Malondialdehyde and Acetaldehyde Protein Adducts Form in the Lungs of Mice Exposed to Alcohol and Cigarette Smoke
- (2011) Michael L. McCaskill et al. ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH
- Sweet and Sour - Oxidative and Carbonyl Stress in Neurological Disorders
- (2011) Robert A. Harris et al. CNS & Neurological Disorders-Drug Targets
- Peroxidation of lipoproteins in multiple sclerosis
- (2011) Gianna Ferretti et al. JOURNAL OF THE NEUROLOGICAL SCIENCES
- Complement factor H binds malondialdehyde epitopes and protects from oxidative stress
- (2011) David Weismann et al. NATURE
- PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
- (2011) P. V. Hornbeck et al. NUCLEIC ACIDS RESEARCH
- Mitochondrial protein tyrosine nitration
- (2010) Laura Castro et al. FREE RADICAL RESEARCH
- Cysteine 723 in the C-linker segment confers oxidative inhibition of hERG1 potassium channels
- (2010) Katrin Kolbe et al. JOURNAL OF PHYSIOLOGY-LONDON
- Regulation of Cellular Metabolism by Protein Lysine Acetylation
- (2010) S. Zhao et al. SCIENCE
- Protein structure homology modeling using SWISS-MODEL workspace
- (2009) Lorenza Bordoli et al. Nature Protocols
- Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
- (2009) C. Choudhary et al. SCIENCE
- Protein Tyrosine Phosphorylation and Protein Tyrosine Nitration in Redox Signaling
- (2008) Hugo P. Monteiro et al. ANTIOXIDANTS & REDOX SIGNALING
- Protein tyrosine nitration—Functional alteration or just a biomarker?
- (2008) José M. Souza et al. FREE RADICAL BIOLOGY AND MEDICINE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now