cellXpress: a fast and user-friendly software platform for profiling cellular phenotypes

BioImageXD: an open, general-purpose and high-throughput image-processing platform

(2012) Pasi Kankaanpää et al.   NATURE METHODS

Icy: an open bioimage informatics platform for extended reproducible research

(2012) Fabrice de Chaumont et al.   NATURE METHODS

OMERO: flexible, model-driven data management for experimental biology

(2012) Chris Allan et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

(2011) Lee Kamentsky et al.   BIOINFORMATICS

EBImage--an R package for image processing with applications to cellular phenotypes

(2010) G. Pau et al.   BIOINFORMATICS

Systems survey of endocytosis by multiparametric image analysis

(2010) Claudio Collinet et al.   NATURE

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes

(2010) Beate Neumann et al.   NATURE

Heterogeneity in the physiological states and pharmacological responses of differentiating 3T3-L1 preadipocytes

(2009) Lit-Hsin Loo et al.   JOURNAL OF CELL BIOLOGY

An approach for extensibly profiling the molecular states of cellular subpopulations

(2009) Lit-Hsin Loo et al.   NATURE METHODS

Multi-parameter phenotypic profiling: using cellular effects to characterize small-molecule compounds

(2009) Yan Feng et al.   NATURE REVIEWS DRUG DISCOVERY

Membrane Domains Based on Ankyrin and Spectrin Associated with Cell-Cell Interactions

(2009) V. Bennett et al.   Cold Spring Harbor Perspectives in Biology

A comparison of common programming languages used in bioinformatics

(2008) Mathieu Fourment et al.   BMC BIOINFORMATICS