GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures

GECA: a fast tool for gene evolution and conservation analysis in eukaryotic protein families

(2012) N. Fawal et al.   BIOINFORMATICS

A holistic phylogeny of the coronin gene family reveals an ancient origin of the tandem-coronin, defines a new subfamily, and predicts protein function

(2011) Christian Eckert et al.   BMC EVOLUTIONARY BIOLOGY

Reconstructing the ancestral angiosperm flower and its initial specializations

(2009) Peter K. Endress et al.   AMERICAN JOURNAL OF BOTANY

Timing of organogenesis support basal position of turtles in the amniote tree of life

(2009) Ingmar Werneburg et al.   BMC EVOLUTIONARY BIOLOGY

Reconstructing the phylogeny of 21 completely sequenced arthropod species based on their motor proteins

(2009) Florian Odronitz et al.   BMC GENOMICS

Common introns within orthologous genes: software and application to plants

(2009) M. D. Wilkerson et al.   BRIEFINGS IN BIOINFORMATICS

Paleontology, Genomics, and Combined-Data Phylogenetics: Can Molecular Data Improve Phylogeny Estimation for Fossil Taxa?

(2009) John J. Wiens   SYSTEMATIC BIOLOGY

Malin: maximum likelihood analysis of intron evolution in eukaryotes

(2008) M. Csuros   BIOINFORMATICS

Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

(2008) Oliver Keller et al.   BMC BIOINFORMATICS

WebScipio: An online tool for the determination of gene structures using protein sequences

(2008) Florian Odronitz et al.   BMC GENOMICS

Comparative genomic analysis of the arthropod muscle myosin heavy chain genes allows ancestral gene reconstruction and reveals a new type of 'partially' processed pseudogene

(2008) Florian Odronitz et al.   BMC MOLECULAR BIOLOGY

Exalign: a new method for comparative analysis of exon–intron gene structures

(2008) Giulio Pavesi et al.   NUCLEIC ACIDS RESEARCH