Reconstituting protein interaction networks using parameter-dependent domain-domain interactions

Inferring high-confidence human protein-protein interactions

(2012) Xueping Yu et al.   BMC BIOINFORMATICS

New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size

(2011) Laure Sambourg et al.   BMC BIOINFORMATICS

Knowledge-guided inference of domain–domain interactions from incomplete protein–protein interaction networks

(2009) Mei Liu et al.   BIOINFORMATICS

Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels

(2009) Kevin Y Yip et al.   BMC BIOINFORMATICS

The Evolutionary History of Protein Domains Viewed by Species Phylogeny

(2009) Song Yang et al.   PLoS One

A discriminative approach for identifying domain-domain interactions from protein-protein interactions

(2009) Xing-Ming Zhao et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity

(2009) Xueping Yu et al.   PLoS Computational Biology

Interrogating domain-domain interactions with parsimony based approaches

(2008) Katia S Guimarães et al.   BMC BIOINFORMATICS

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

Literature-curated protein interaction datasets

(2008) Michael E Cusick et al.   NATURE METHODS

Estimating the size of the human interactome

(2008) M. P. H. Stumpf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE