A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser

(2012) David A Fitzpatrick et al.   BMC GENOMICS

Sequence and Analysis of the Genome of the Pathogenic Yeast Candida orthopsilosis

(2012) Alessandro Riccombeni et al.   PLoS One

Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments

(2011) Seán S ÓhÉigeartaigh et al.   BMC GENOMICS

Identification and annotation of noncoding RNAs in Saccharomycotina

(2011) José Almeida Cruz et al.   COMPTES RENDUS BIOLOGIES

Transposable elements in yeasts

(2011) Claudine Bleykasten-Grosshans et al.   COMPTES RENDUS BIOLOGIES

Comparative study on synteny between yeasts and vertebrates

(2011) Guénola Drillon et al.   COMPTES RENDUS BIOLOGIES

Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents

(2011) J. L. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An algorithm for automated closure during assembly

(2010) Sergey Koren et al.   BMC BIOINFORMATICS

Insertion of Horizontally Transferred Genes within Conserved Syntenic Regions of Yeast Genomes

(2009) Thomas Rolland et al.   PLoS One

How confident can we be that orthologs are similar, but paralogs differ?

(2009) Romain A. Studer et al.   TRENDS IN GENETICS

Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns

(2009) Karen R. Christie et al.   TRENDS IN MICROBIOLOGY

Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome

(2009) Jonathan L. Gordon et al.   PLoS Genetics

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS