Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation

EDAR: An Efficient Error Detection and Removal Algorithm for Next Generation Sequencing Data

(2010) Xiaohong Zhao et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

SHREC: a short-read error correction method

(2009) J. Schroder et al.   BIOINFORMATICS

PIQA: pipeline for Illumina G1 genome analyzer data quality assessment

(2009) A. Martinez-Alcantara et al.   BIOINFORMATICS

TagDust--a program to eliminate artifacts from next generation sequencing data

(2009) T. Lassmann et al.   BIOINFORMATICS

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

(2009) M. Morgan et al.   BIOINFORMATICS

Swift: primary data analysis for the Illumina Solexa sequencing platform

(2009) Nava Whiteford et al.   BIOINFORMATICS