Improving biomarker list stability by integration of biological knowledge in the learning process

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins

(2010) Young-Rae Cho et al.   BMC BIOINFORMATICS

Current and emerging biomarkers in breast cancer: prognosis and prediction

(2010) Marion T Weigel et al.   ENDOCRINE-RELATED CANCER

Protein–Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks

(2010) Javier De Las Rivas et al.   PLoS Computational Biology

Robust biomarker identification for cancer diagnosis with ensemble feature selection methods

(2009) Thomas Abeel et al.   BIOINFORMATICS

Classification and biomarker identification using gene network modules and support vector machines

(2009) Malik Yousef et al.   BMC BIOINFORMATICS

Classification across gene expression microarray studies

(2009) Andreas Buness et al.   BMC BIOINFORMATICS

A-MADMAN: Annotation-based microarray data meta-analysis tool

(2009) Andrea Bisognin et al.   BMC BIOINFORMATICS

Incorporating pathway information into boosting estimation of high-dimensional risk prediction models

(2009) Harald Binder et al.   BMC BIOINFORMATICS

Stability and aggregation of ranked gene lists

(2009) A.-L. Boulesteix et al.   BRIEFINGS IN BIOINFORMATICS

Integrating Biological Knowledge with Gene Expression Profiles for Survival Prediction of Cancer

(2009) Xi Chen et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Biological Convergence of Cancer Signatures

(2009) Xavier Solé et al.   PLoS One

Network-constrained regularization and variable selection for analysis of genomic data

(2008) C. Li et al.   BIOINFORMATICS

Metrics for GO based protein semantic similarity: a systematic evaluation

(2008) Catia Pesquita et al.   BMC BIOINFORMATICS

The Humoral Immune System Has a Key Prognostic Impact in Node-Negative Breast Cancer

(2008) M. Schmidt et al.   CANCER RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Development and validation of biomarker classifiers for treatment selection

(2007) Richard Simon   JOURNAL OF STATISTICAL PLANNING AND INFERENCE