Applications of the pipeline environment for visual informatics and genomics computations

PPLook: an automated data mining tool for protein-protein interaction

(2010) Shao-Wu Zhang et al.   BMC BIOINFORMATICS

Differentiating Prenatal Exposure to Methamphetamine and Alcohol versus Alcohol and Not Methamphetamine using Tensor-Based Brain Morphometry and Discriminant Analysis

(2010) E. R. Sowell et al.   JOURNAL OF NEUROSCIENCE

The construction of a Chinese MRI brain atlas: A morphometric comparison study between Chinese and Caucasian cohorts

(2010) Yuchun Tang et al.   NEUROIMAGE

Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline

(2010) Ivo Dinov et al.   PLoS One

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Semantic web data warehousing for caGrid

(2009) James P McCusker et al.   BMC BIOINFORMATICS

Metadata mapping and reuse in caBIG™

(2009) Isaac Kunz et al.   BMC BIOINFORMATICS

Personalized copy number and segmental duplication maps using next-generation sequencing

(2009) Can Alkan et al.   NATURE GENETICS

Searching for SNPs with cloud computing

(2009) Ben Langmead et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Provenance in neuroimaging

(2008) Allan J. MacKenzie-Graham et al.   NEUROIMAGE

iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources

(2008) Ivo D. Dinov et al.   PLoS One

Third generation participatory design in health informatics—Making user participation applicable to large-scale information system projects

(2007) Sofie Pilemalm et al.   JOURNAL OF BIOMEDICAL INFORMATICS