Empirical comparison of cross-platform normalization methods for gene expression data

DSGeo: Software tools for cross-platform analysis of gene expression data in GEO

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WebArrayDB: cross-platform microarray data analysis and public data repository

(2009) Xiao-Qin Xia et al.   BIOINFORMATICS

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

(2009) Enrico Glaab et al.   BMC BIOINFORMATICS

Can Survival Prediction Be Improved By Merging Gene Expression Data Sets?

(2009) Haleh Yasrebi et al.   PLoS One

A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments

(2008) Fangxin Hong et al.   BIOINFORMATICS

Merging two gene-expression studies via cross-platform normalization

(2008) Andrey A. Shabalin et al.   BIOINFORMATICS

MAID : An effect size based model for microarray data integration across laboratories and platforms

(2008) Ivan Borozan et al.   BMC BIOINFORMATICS

Empirical Bayes accomodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients

(2008) Wynn L Walker et al.   BMC GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets

(2008) Adaikalavan Ramasamy et al.   PLOS MEDICINE