SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Published 2011 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Authors
Keywords
-
Journal
BMC BIOINFORMATICS
Volume 12, Issue 1, Pages 267
Publisher
Springer Nature
Online
2011-07-01
DOI
10.1186/1471-2105-12-267
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia
- (2011) Xiao-Jing Yan et al. NATURE GENETICS
- SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
- (2010) Rodrigo Goya et al. BIOINFORMATICS
- Transcriptome genetics using second generation sequencing in a Caucasian population
- (2010) Stephen B. Montgomery et al. NATURE
- Understanding mechanisms underlying human gene expression variation with RNA sequencing
- (2010) Joseph K. Pickrell et al. NATURE
- A map of human genome variation from population-scale sequencing
- (2010) Richard M. Durbin et al. NATURE
- Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
- (2010) X. Yi et al. SCIENCE
- Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing
- (2010) Qi Zhao et al. GENOME BIOLOGY
- VarScan: variant detection in massively parallel sequencing of individual and pooled samples
- (2009) Daniel C. Koboldt et al. BIOINFORMATICS
- DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
- (2009) Likun Wang et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- SNP detection for massively parallel whole-genome resequencing
- (2009) R. Li et al. GENOME RESEARCH
- Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing
- (2009) Graham A. Heap et al. HUMAN MOLECULAR GENETICS
- Exome sequencing identifies the cause of a mendelian disorder
- (2009) Sarah B Ng et al. NATURE GENETICS
- Mapping complex disease traits with global gene expression
- (2009) William Cookson et al. NATURE REVIEWS GENETICS
- Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome
- (2009) Elaine R. Mardis et al. NEW ENGLAND JOURNAL OF MEDICINE
- KEGG for representation and analysis of molecular networks involving diseases and drugs
- (2009) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- The diploid genome sequence of an Asian individual
- (2008) Jun Wang et al. NATURE
- Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
- (2008) Brian T. Wilhelm et al. NATURE
- Stem cell transcriptome profiling via massive-scale mRNA sequencing
- (2008) Nicole Cloonan et al. NATURE METHODS
- Ensembl 2009
- (2008) T. J. P. Hubbard et al. NUCLEIC ACIDS RESEARCH
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now