Bioinformatic approaches for the structure and function of membrane proteins

Transmembrane helices predicted at 95% accuracy

(2010) Burkhard Rost et al.   PROTEIN SCIENCE

Architecture of helix bundle membrane proteins: An analysis of cytochrome c oxidase from bovine mitochondria

(2010) Erik Wallin et al.   PROTEIN SCIENCE

TOPCONS: consensus prediction of membrane protein topology

(2009) A. Bernsel et al.   NUCLEIC ACIDS RESEARCH

Integration of Evolutionary Features for the Identification of Functionally Important Residues in Major Facilitator Superfamily Transporters

(2009) Jouhyun Jeon et al.   PLoS Computational Biology

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

(2008) Håkan Viklund et al.   BIOINFORMATICS

MemBrain: Improving the Accuracy of Predicting Transmembrane Helices

(2008) Hongbin Shen et al.   PLoS One

Prediction of membrane-protein topology from first principles

(2008) A. Bernsel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Common occurrence of internal repeat symmetry in membrane proteins

(2007) Sungwon Choi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structure of the transmembrane region of the M2 protein H+ channel

(2002) Junfeng Wang et al.   PROTEIN SCIENCE

Prediction of partial membrane protein topologies using a consensus approach

(2002) Johan Nilsson et al.   PROTEIN SCIENCE

Transmembrane helix predictions revisited

(2002) Chien Peter Chen et al.   PROTEIN SCIENCE