Microevolution from shock to adaptation revealed strategies improving ethanol tolerance and production in Thermoanaerobacter

Harnessing recombination to speed adaptive evolution in Escherichia coli

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Genomic analysis of a key innovation in an experimental Escherichia coli population

(2012) Zachary D. Blount et al.   NATURE

Correlation of Genomic and Physiological Traits of Thermoanaerobacter Species with Biofuel Yields

(2011) Christopher L. Hemme et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Engineering microbes for tolerance to next-generation biofuels

(2011) Mary J Dunlop   Biotechnology for Biofuels

Engineering genomes in multiplex

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Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli

(2011) Jeremy J Minty et al.   Microbial Cell Factories

Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways

(2011) Brooks B Bond-Watts et al.   Nature Chemical Biology

A framework for variation discovery and genotyping using next-generation DNA sequencing data

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Genomic Library Screens for Genes Involved in n-Butanol Tolerance in Escherichia coli

(2011) Luis H. Reyes et al.   PLoS One

Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

(2011) S. D. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Thermoanaerobacter Glycobiome Reveals Mechanisms of Pentose and Hexose Co-Utilization in Bacteria

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Functional Genomic Study of Exogenous n-Butanol Stress in Escherichia coli

(2010) B. J. Rutherford et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mechanisms of ethanol tolerance in Saccharomyces cerevisiae

(2010) Menggen Ma et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering

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Proteome Reference Map and Comparative Proteomic Analysis between a Wild TypeClostridium acetobutylicumDSM 1731 and its Mutant with Enhanced Butanol Tolerance and Butanol Yield

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Rapid dissection of a complex phenotype through genomic-scale mapping of fitness altering genes

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A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediation

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Ultrasound-Mediated DNA Transformation in Thermophilic Gram-Positive Anaerobes

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Molecular Mechanisms of Ethanol-Induced Pathogenesis Revealed by RNA-Sequencing

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Analysis of composition and structure of Clostridium thermocellum membranes from wild-type and ethanol-adapted strains

(2009) Michael D. Timmons et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

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Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Sigma factor mimicry involved in regulation of general stress response

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Thermophilic ethanologenesis: future prospects for second-generation bioethanol production

(2009) Mark P. Taylor et al.   TRENDS IN BIOTECHNOLOGY

Avoiding Dangerous Missense: Thermophiles Display Especially Low Mutation Rates

(2009) John W. Drake   PLoS Genetics

Microbial responses to solvent and alcohol stress

(2008) Mark Taylor et al.   Biotechnology Journal

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

(2008) Katy C Kao et al.   NATURE GENETICS

Metabolic engineering of a thermophilic bacterium to produce ethanol at high yield

(2008) A. J. Shaw et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The aldehyde/alcohol dehydrogenase (AdhE) in relation to the ethanol formation in Thermoanaerobacter ethanolicus JW200

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