Bioenergy grass feedstock: current options and prospects for trait improvement using emerging genetic, genomic, and systems biology toolkits

A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy

(2012) Kankshita Swaminathan et al.   BMC GENOMICS

Control of grain size, shape and quality by OsSPL16 in rice

(2012) Shaokui Wang et al.   NATURE GENETICS

A high throughput DNA extraction method with high yield and quality

(2012) Zhanguo Xin et al.   Plant Methods

Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology

(2012) Yixing Wang et al.   PLoS One

High Resolution Genetic Mapping by Genome Sequencing Reveals Genome Duplication and Tetraploid Genetic Structure of the Diploid Miscanthus sinensis

(2012) Xue-Feng Ma et al.   PLoS One

Conserved Non-Coding Regulatory Signatures in Arabidopsis Co-Expressed Gene Modules

(2012) Jacob B. Spangler et al.   PLoS One

Influence of Feedstock Particle Size on Lignocellulose Conversion—A Review

(2011) Bernardo C. Vidal et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Enhanced saccharification kinetics of sugarcane bagasse pretreated in 1-butyl-3-methylimidazolium chloride at high temperature and without complete dissolution

(2011) Karatzos Sergios Kimon et al.   BIORESOURCE TECHNOLOGY

Low temperature alkali pretreatment for improving enzymatic digestibility of sweet sorghum bagasse for ethanol production

(2011) Long Wu et al.   BIORESOURCE TECHNOLOGY

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits

(2011) Christopher A Saski et al.   BMC GENOMICS

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

(2011) Frank A Feltus et al.   BMC GENOMICS

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Enzymatic hydrolysis of organosolv Kanlow switchgrass and its impact on cellulose crystallinity and degree of polymerization

(2011) Carolina Cateto et al.   Energy & Environmental Science

Assemblathon 1: A competitive assessment of de novo short read assembly methods

(2011) D. Earl et al.   GENOME RESEARCH

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks

(2011) Hui Shen et al.   NEW PHYTOLOGIST

A combined biochemical screen and TILLING approach identifies mutations in Sorghum bicolor L. Moench resulting in acyanogenic forage production

(2011) Cecilia K. Blomstedt et al.   PLANT BIOTECHNOLOGY JOURNAL

Next-generation mapping of Arabidopsis genes

(2011) Ryan S. Austin et al.   PLANT JOURNAL

Discovery of Rare Mutations in Populations: TILLING by Sequencing

(2011) H. Tsai et al.   PLANT PHYSIOLOGY

Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice

(2011) S. P. Ficklin et al.   PLANT PHYSIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The Transcriptome of the Reference Potato Genome Solanum tuberosum Group Phureja Clone DM1-3 516R44

(2011) Alicia N. Massa et al.   PLoS One

Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize

(2011) J. A. Poland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems Genetics

(2011) J. H. Nadeau et al.   SCIENCE

Population genetics of genomics-based crop improvement methods

(2011) Martha T. Hamblin et al.   TRENDS IN GENETICS

Towards Establishment of a Rice Stress Response Interactome

(2011) Young-Su Seo et al.   PLoS Genetics

Inhibition of Cellulase-Catalyzed Lignocellulosic Hydrolysis by Iron and Oxidative Metal Ions and Complexes

(2010) A. Tejirian et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in Submicrometer Structure of Enzymatically Hydrolyzed Microcrystalline Cellulose

(2010) Paavo A. Penttilä et al.   BIOMACROMOLECULES

Enzyme adsorption and recycling during hydrolysis of wheat straw lignocellulose

(2010) Benkun Qi et al.   BIORESOURCE TECHNOLOGY

Increasing cellulose accessibility is more important than removing lignin: A comparison of cellulose solvent-based lignocellulose fractionation and soaking in aqueous ammonia

(2010) Joseph A. Rollin et al.   BIOTECHNOLOGY AND BIOENGINEERING

Effect of varying feedstock-pretreatment chemistry combinations on the formation and accumulation of potentially inhibitory degradation products in biomass hydrolysates

(2010) Bowen Du et al.   BIOTECHNOLOGY AND BIOENGINEERING

Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy

(2010) Víctor M González et al.   BMC PLANT BIOLOGY

Cellulose crystallinity - a key predictor of the enzymatic hydrolysis rate

(2010) Mélanie Hall et al.   FEBS Journal

Efficacy of Singular and Stackedbrown midrib 6and12in the Modification of Lignocellulose and Grain Chemistry

(2010) Scott E. Sattler et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Lignin Extraction from Straw by Ionic Liquids and Enzymatic Hydrolysis of the Cellulosic Residues

(2010) Dongbao Fu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

The Association of Multiple Interacting Genes with Specific Phenotypes in Rice Using Gene Coexpression Networks

(2010) Stephen P. Ficklin et al.   PLANT PHYSIOLOGY

Enhanced enzymatic hydrolysis and structural features of corn stover by FeCl3 pretreatment

(2009) Li Liu et al.   BIORESOURCE TECHNOLOGY

An overview of second generation biofuel technologies

(2009) Ralph E.H. Sims et al.   BIORESOURCE TECHNOLOGY

Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification

(2009) Chenlin Li et al.   BIORESOURCE TECHNOLOGY

Cellulase adsorption and relationship to features of corn stover solids produced by leading pretreatments

(2009) Rajeev Kumar et al.   BIOTECHNOLOGY AND BIOENGINEERING

Visualization of biomass solubilization and cellulose regeneration during ionic liquid pretreatment of switchgrass

(2009) Seema Singh et al.   BIOTECHNOLOGY AND BIOENGINEERING

Access of cellulase to cellulose and lignin for poplar solids produced by leading pretreatment technologies

(2009) Rajeev Kumar et al.   BIOTECHNOLOGY PROGRESS

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

(2009) Burkhard Steuernagel et al.   BMC GENOMICS

The effect of the cellulose-binding domain from Clostridium cellulovorans on the supramolecular structure of cellulose fibers

(2009) Diana Ciolacu et al.   CARBOHYDRATE RESEARCH

Feruloylation in Grasses: Current and Future Perspectives

(2009) Marcia M. de O. Buanafina   Molecular Plant

Three Combined Quantitative Trait Loci from Nonhost Lactuca saligna Are Sufficient to Provide Complete Resistance of Lettuce Against Bremia lactucae

(2009) Ningwen W. Zhang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Comparative Genomics of Grasses Promises a Bountiful Harvest

(2009) A. H. Paterson et al.   PLANT PHYSIOLOGY

RiceArrayNet: A Database for Correlating Gene Expression from Transcriptome Profiling, and Its Application to the Analysis of Coexpressed Genes in Rice

(2009) T.-H. Lee et al.   PLANT PHYSIOLOGY

Genetic Properties of the Maize Nested Association Mapping Population

(2009) M. D. McMullen et al.   SCIENCE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

A Systems Genetics Approach Implicates USF1, FADS3, and Other Causal Candidate Genes for Familial Combined Hyperlipidemia

(2009) Christopher L. Plaisier et al.   PLoS Genetics

Quantitative Genomics: Analyzing Intraspecific Variation Using Global Gene Expression Polymorphisms or eQTLs

(2008) Dan Kliebenstein   Annual Review of Plant Biology

Evaluation of a Hypocrea jecorina Enzyme Preparation for Hydrolysis of Tifton 85 Bermudagrass

(2008) E. A. Ximenes et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Evaluation and Characterization of Forage Sorghum as Feedstock for Fermentable Sugar Production

(2008) D. Y. Corredor et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Effects of Cellulose Crystallinity, Hemicellulose, and Lignin on the Enzymatic Hydrolysis ofMiscanthus sinensisto Monosaccharides

(2008) Makoto YOSHIDA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Applying genotyping (TILLING) and phenotyping analyses to elucidate gene function in a chemically induced sorghum mutant population

(2008) Zhanguo Xin et al.   BMC PLANT BIOLOGY

Unique aspects of the grass cell wall

(2008) J VOGEL   CURRENT OPINION IN PLANT BIOLOGY

Efficient Mapping of Plant Height Quantitative Trait Loci in a Sorghum Association Population With Introgressed Dwarfing Genes

(2008) P. J. Brown et al.   GENETICS

Genetic Design and Statistical Power of Nested Association Mapping in Maize

(2008) Jianming Yu et al.   GENETICS

Cellulase kinetics as a function of cellulose pretreatment

(2008) Andreas S. Bommarius et al.   METABOLIC ENGINEERING

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Relative Crystallinity of Plant Biomass: Studies on Assembly, Adaptation and Acclimation

(2008) Darby Harris et al.   PLoS One

Land Clearing and the Biofuel Carbon Debt

(2008) J. Fargione et al.   SCIENCE

Transcriptome content and dynamics at single-nucleotide resolution

(2008) Nicole Cloonan et al.   GENOME BIOLOGY

Pathways for development of a biorenewables industry

(2007) C. Schell et al.   BIORESOURCE TECHNOLOGY