Identification of novel biomass-degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation

Characterization of a novel endo-β-1,4-glucanase from Armillaria gemina and its application in biomass hydrolysis

(2013) Sujit Sadashiv Jagtap et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Engineered thermostable fungal Cel6A and Cel7A cellobiohydrolases hydrolyze cellulose efficiently at elevated temperatures

(2013) Indira Wu et al.   BIOTECHNOLOGY AND BIOENGINEERING

Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production

(2013) Jui-Jen Chang et al.   Biotechnology for Biofuels

Re-Annotation of Protein-Coding Genes in 10 Complete Genomes of Neisseriaceae Family by Combining Similarity-Based and Composition-Based Methods

(2013) F.-B. Guo et al.   DNA RESEARCH

Novel Penicillium cellulases for total hydrolysis of lignocellulosics

(2013) Kaisa Marjamaa et al.   ENZYME AND MICROBIAL TECHNOLOGY

A single-molecule analysis reveals morphological targets for cellulase synergy

(2013) Jerome M Fox et al.   Nature Chemical Biology

Purification and characterization of cellulase from North Pacific krill (Euphausia pacifica). Analysis of cleavage specificity of the enzyme

(2012) Akihiko Tsuji et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

cDNA cloning, expression, and enzymatic activity of a novel endogenous cellulase from the beetle Batocera horsfieldi

(2012) Dingguo Xia et al.   GENE

High-Quality Draft Genome Sequence of the Opitutaceae Bacterium Strain TAV1, a Symbiont of the Wood-Feeding Termite Reticulitermes flavipes

(2012) J. Isanapong et al.   JOURNAL OF BACTERIOLOGY

Cloning and recombinant expression of a cellulase from the cellulolytic strain Streptomyces sp. G12 isolated from compost

(2012) Antonella Amore et al.   Microbial Cell Factories

CDD: conserved domains and protein three-dimensional structure

(2012) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Expression and purification of two Family GH31 α-glucosidases from Bacteroides thetaiotaomicron

(2012) Marcia M. Chaudet et al.   PROTEIN EXPRESSION AND PURIFICATION

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

(2012) Alex Copeland et al.   Standards in Genomic Sciences

Prevalence of Ca2+-ATPase-Mediated Carbonate Dissolution among Cyanobacterial Euendoliths

(2011) E. L. Ramírez-Reinat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protein function prediction: towards integration of similarity metrics

(2011) Serkan Erdin et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Discovery and structural characterization of a novel glycosidase family of marine origin

(2011) Etienne Rebuffet et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Sequence of the White Koji Mold Aspergillus kawachii IFO 4308, Used for Brewing the Japanese Distilled Spirit Shochu

(2011) Taiki Futagami et al.   EUKARYOTIC CELL

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Identification of a Novel Gene for Biosynthesis of a Bacteroid-Specific Electron Carrier Menaquinone

(2011) Fuli Xie et al.   PLoS One

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Complete genome sequence of Leadbetterella byssophila type strain (4M15T)

(2011) Birte Abt et al.   Standards in Genomic Sciences

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)

(2011) Yun-juan Chang et al.   Standards in Genomic Sciences

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Characterization of Xyn10A, a highly active xylanase from the human gut bacterium Bacteroides xylanisolvens XB1A

(2010) Caroline Mirande et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Stimulation of Lignocellulosic Biomass Hydrolysis by Proteins of Glycoside Hydrolase Family 61: Structure and Function of a Large, Enigmatic Family

(2010) Paul V. Harris et al.   BIOCHEMISTRY

Practical screening of purified cellobiohydrolases and endoglucanases with alpha-cellulose and specification of hydrodynamics

(2010) Gernot Jager et al.   Biotechnology for Biofuels

Cellulase activities in biomass conversion: measurement methods and comparison

(2010) Mehdi Dashtban et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47T

(2010) J. G. Elkins et al.   JOURNAL OF BACTERIOLOGY

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

SUPERFAMILY 1.75 including a domain-centric gene ontology method

(2010) D. A. de Lima Morais et al.   NUCLEIC ACIDS RESEARCH

Synthesis, regulation and utilization of lignocellulosic biomass

(2010) Darby Harris et al.   PLANT BIOTECHNOLOGY JOURNAL

An Oxidative Enzyme Boosting the Enzymatic Conversion of Recalcitrant Polysaccharides

(2010) Gustav Vaaje-Kolstad et al.   SCIENCE

Complete genome sequence of Spirosoma linguale type strain (1T)

(2010) Kathleen Lail et al.   Standards in Genomic Sciences

Effect of Linker Length and Dockerin Position on Conversion of a Thermobifida fusca Endoglucanase to the Cellulosomal Mode

(2009) J. Caspi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives

(2009) Akinori Matsushika et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Structure of a SusD Homologue, BT1043, Involved in MucinO-Glycan Utilization in a Prominent Human Gut Symbiont†,‡

(2009) Nicole Koropatkin et al.   BIOCHEMISTRY

Dyadobacter soli sp. nov., a starch-degrading bacterium isolated from farm soil

(2009) M. Lee et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Spirosoma panaciterrae sp. nov., isolated from soil

(2009) L. N. Ten et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genome Sequence of the Cellulosome-Producing Mesophilic Organism Clostridium cellulovorans 743B

(2009) Y. Tamaru et al.   JOURNAL OF BACTERIOLOGY

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Combinatorial binding predicts spatio-temporal cis-regulatory activity

(2009) Robert P. Zinzen et al.   NATURE

The integrated microbial genomes system: an expanding comparative analysis resource

(2009) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

(2009) Konstantinos Mavromatis et al.   PLoS One

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing

(2009) S. Le Crom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete genome sequence of Dyadobacter fermentans type strain (NS114T)

(2009) Elke Lang et al.   Standards in Genomic Sciences

PRINTR: Prediction of RNA binding sites in proteins using SVM and profiles

(2008) Y. Wang et al.   AMINO ACIDS

Tertiary Structure and Carbohydrate Recognition by the Chitin-Binding Domain of a Hyperthermophilic Chitinase from Pyrococcus furiosus

(2008) Tsutomu Nakamura et al.   JOURNAL OF MOLECULAR BIOLOGY

Genomics of cellulosic biofuels

(2008) Edward M. Rubin   NATURE

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Cell-wall carbohydrates and their modification as a resource for biofuels

(2008) Markus Pauly et al.   PLANT JOURNAL