Performance of secondary structure prediction methods on proteins containing structurally ambivalent sequence fragments

Search for identical octapeptides in unrelated proteins: Structural plasticity revisited

(2011) K. M. Saravanan et al.   BIOPOLYMERS

Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be

(2010) Christian Schaefer et al.   BIOINFORMATICS

Sequence and structural analysis of two designed proteins with 88% identity adopting different folds

(2010) K. M. Saravanan et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

A minimal sequence code for switching protein structure and function

(2009) Patrick A. Alexander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH