4.7 Article

Introduction of non-natural amino acid residues into the substrate-specific P1 position of trypsin inhibitor SFTI-1 yields potent chymotrypsin and cathepsin G inhibitors

Journal

BIOORGANIC & MEDICINAL CHEMISTRY
Volume 17, Issue 9, Pages 3302-3307

Publisher

PERGAMON-ELSEVIER SCIENCE LTD
DOI: 10.1016/j.bmc.2009.03.045

Keywords

Inhibitors, Peptides; Chemical synthesis; Cathepsin G; Chymotrypsin; Phenylalanine derivatives

Funding

  1. University of Gdansk [BW/8000-5-0125-8]
  2. Ministry of Science and Higher Education [2889/H03/2008/34]

Ask authors/readers for more resources

A series of trypsin inhibitor SFTI-1 compounds modified in substrate-specific P-1 position was synthesized by the solid-phase method. Lys5 present in the wild inhibitor was replaced by Phe derivatives substituted in para position of the phenyl ring, L-pyridylalanine and N-4-nitrobenzylgycine. Their inhibitory activities with bovine alpha-chymotrypsin and cathepsin G were estimated by determination of association equilibrium constants (K-a). All analogues inhibited bovine alpha-chymotrypsin. The highest inihbitory activity displayed peptides with the fluorine, nitro and methyl substituents. They were 13-15-fold more active than [Phe(5)] SFTI-1 used as a reference. They are the most potent chymotrypsin inhibitors of this size. Substitution of Lys5 by Phe did not change the cathepsin G inhibitory activity. Introduction of Phe( p-F), Phe (p-NH2) and Phe(p-CH3) in this position retained the affinity towards this proteinase, whereas Phe(p-guanidine) gave an inhibitor more than twice as active, which appeared to be stable in human serum. On the other hand, a peptomeric analogue with N-4-nitrobenzylglycine failed to inhibit cathepsin G. Despite the fact the introduced amino acids were non-coded, the peptide bonds formed by them were hydrolyzed by chymotrypsin. We postulate that additional interaction of para-substitutents with the enzyme are responsible for the enhanced inhibitory activity of the analogues. (C) 2009 Elsevier Ltd. All rights reserved.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

Non-Proteasomal Urine Activity in Bladder Cancer

Natalia Gruba, Lech Stachurski, Adam Lesner

Summary: Bladder cancer is a common cancer with high recurrence rate and poor prognosis, usually asymptomatic and requiring invasive and expensive regular re-examinations. The study used chromogenic substrates for qualitative determination of urine enzyme activity in healthy individuals and bladder cancer patients, finding proteolytic activity in cancer patients but not in healthy volunteers.

CHEMISTRY & BIODIVERSITY (2021)

Letter Respiratory System

Proteinase release from activated neutrophils in mechanically ventilated patients with non-COVID-19 and COVID-19 pneumonia

Seda Seren, Lohann Derian, Irem Keles, Antoine Guillon, Adam Lesner, Loic Gonzalez, Thomas Baranek, Mustapha Si-Tahar, Sylvain Marchand-Adam, Dieter E. Jenne, Christophe Paget, Youenn Jouan, Brice Korkmaz

EUROPEAN RESPIRATORY JOURNAL (2021)

Review Biochemistry & Molecular Biology

Digestive Inflammation: Role of Proteolytic Dysregulation

Vincent Mariaule, Aicha Kriaa, Souha Soussou, Soufien Rhimi, Houda Boudaya, Juan Hernandez, Emmanuelle Maguin, Adam Lesner, Moez Rhimi

Summary: Proteolytic imbalance is often linked to diseases, especially in digestive inflammation. Serine proteases and matrix metalloproteases play crucial roles in inflammatory responses, but the imbalance between these enzymes and their inhibitors could contribute to disease pathogenesis.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Biochemistry & Molecular Biology

Structural Determinants of Substrate Specificity of SplF Protease from Staphylococcus aureus

Natalia Stach, Abdulkarim Karim, Przemyslaw Golik, Radoslaw Kitel, Katarzyna Pustelny, Natalia Gruba, Katarzyna Groborz, Urszula Jankowska, Sylwia Kedracka-Krok, Benedykt Wladyka, Marcin Drag, Adam Lesner, Grzegorz Dubin

Summary: By studying the substrate specificity and structure of SplF, it was found that the enzyme has a strict preference for long aliphatic sidechains at the P1 subsite and significant selectivity for aromatic residues at P3, with its crystal structure defining the structural basis of this substrate specificity. Comparisons with other Spl proteases suggest that the spl operon encodes a unique extracellular proteolytic system.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Biochemistry & Molecular Biology

Novel Cell Permeable Polymers of N-Substituted L-2,3-Diaminopropionic Acid (DAPEGs) and Cellular Consequences of Their Interactions with Nucleic Acids

Anita Romanowska, Katarzyna Wegrzyn, Katarzyna Bury, Emilia Sikorska, Aleksandra Gnatek, Agnieszka Piwkowska, Igor Konieczny, Adam Lesner, Magdalena Wysocka

Summary: Novel polycationic polymers composed of N-substituted L-2,3-diaminopropionic acid residues were synthesized and their cell permeability, cytotoxicity, and DNA-binding ability were investigated in this study. The compounds showed efficient cell membrane penetration, dsDNA binding, and minimal cytotoxicity. The interaction with plasmid DNA and the length of the main chain of the compounds influenced the formation of unique nanostructures.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Review Biochemistry & Molecular Biology

Gut Serpinome: Emerging Evidence in IBD

Hela Mkaouar, Vincent Mariaule, Soufien Rhimi, Juan Hernandez, Aicha Kriaa, Amin Jablaoui, Nizar Akermi, Emmanuelle Maguin, Adam Lesner, Brice Korkmaz, Moez Rhimi

Summary: Inflammatory bowel diseases are incurable disorders with increasing prevalence and global socioeconomic impact. Gut microbiota dysbiosis and increased activity of serine proteases may play roles in the onset and maintenance of the disease, with potential therapeutic relevance of gut microbiota serpins.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Biochemistry & Molecular Biology

Vasopressin and Its Analogues: From Natural Hormones to Multitasking Peptides

Mladena Glavas, Agata Gitlin-Domagalska, Dawid Debowski, Natalia Ptaszynska, Anna Legowska, Krzysztof Rolka

Summary: This article discusses the synthesis and functions of human neurohormone vasopressin (AVP), as well as the efforts and applications in finding AVP analogues. Natural and synthetic AVP analogues play important therapeutic roles in medicine, such as lypressin and terlipressin. Recent research also explores the potential applications of AVP analogues in the treatment of SARS-CoV-2.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Biochemistry & Molecular Biology

Theoretical Investigation of the Coronavirus SARS-CoV-2 (COVID-19) Infection Mechanism and Selectivity

Iga Biskupek, Adam Sieradzan, Cezary Czaplewski, Adam Liwo, Adam Lesner, Artur Gieldon

Summary: This manuscript proposes a two-stage infection mechanism of the SARS-CoV-2 virus, highlighting the crucial role of the interaction between the virus and the ACE2 receptor in the infection process, and identifies the importance of three key residues.

MOLECULES (2022)

Review Cell Biology

Bile Acids: Key Players in Inflammatory Bowel Diseases?

Aicha Kriaa, Vincent Mariaule, Amin Jablaoui, Soufien Rhimi, Hela Mkaouar, Juan Hernandez, Brice Korkmaz, Adam Lesner, Emmanuelle Maguin, Ali Aghdassi, Moez Rhimi

Summary: Inflammatory bowel diseases (IBDs) are a global public health problem with limited effective therapeutic options. Changes in gut microbiota composition and alterations in bile acids (BAs) have been identified as important factors in dysregulated intestinal immunity and the pathogenesis of IBDs. This review explores the interactions between BAs and gut microbiota in IBDs and discusses how the gut microbiota-BA-host axis may influence digestive inflammation.

CELLS (2022)

Article Pharmacology & Pharmacy

New Peptide Based Fluconazole Conjugates with Expanded Molecular Targets

Wioletta Brankiewicz, Joanna Okonska, Katarzyna Serbakowska, Jan Lica, Marek Drab, Natalia Ptaszynska, Anna Legowska, Krzysztof Rolka, Piotr Szweda

Summary: This study reported five conjugates composed of fluconazole and cell penetrating or antimicrobial peptide, showing high antifungal activity, especially against fluconazole-resistant strains, with low cytotoxicity.

PHARMACEUTICS (2022)

Article Chemistry, Medicinal

Cyclic Peptidic Furin Inhibitors Developed by Combinatorial Chemistry

Agata Gitlin-Domagalska, Dawid Debowski, Aleksandra Maciejewska, Sergey Samsonov, Martyna Maszota-Zieleniak, Natalia Ptaszynska, Anna Legowska, Krzysztof Rolka

Summary: In this study, five new peptide furin inhibitors with strong inhibitory action and stability were obtained using combinatorial chemistry. Inhibitor 5 showed the highest activity and was more resistant to proteolysis compared to the reference furin inhibitor described in the literature. It also reduced furin-like activity in PANC-1 cell lysate. Molecular dynamics simulations were performed to analyze the furin-inhibitor complexes in detail.

ACS MEDICINAL CHEMISTRY LETTERS (2023)

Article Multidisciplinary Sciences

Autophagy of Candida albicans cells after the action of earthworm Venetin-1 nanoparticle with protease inhibitor activity

Sylwia Wojcik-Mieszawska, Kinga Lewtak, Ewa Skwarek, Dawid Debowski, Agata Gitlin-Domagalska, Jakub Nowak, Jerzy Wydrych, Jaroslaw Pawelec, Marta J. Fiolka

Summary: The present studies demonstrate the impact of Venetin-1 protein-polysaccharide complex from earthworm coelomic fluid on Candida albicans cells. The action of Venetin-1 led to reduced survival rate, enlarged and deformed cells, and an increase in cells with enlarged vacuoles. Autophagy process was observed through different microscopy techniques. Changes in vacuoles were accompanied by alterations in mitochondrial size, possibly due to oxidative stress.

SCIENTIFIC REPORTS (2023)

Article Biochemistry & Molecular Biology

Synthesis of Novel Arginine Building Blocks with Increased Lipophilicity Compatible with Solid-Phase Peptide Synthesis

Mladena Glavas, Agata Gitlin-Domagalska, Natalia Ptaszynska, Dominika Starego, Sylwia Freza, Dawid Debowski, Aleksandra Helbik-Maciejewska, Anna Legowska, Chaim Gilon, Krzysztof Rolka

Summary: Arginine increases peptides' hydrophilicity and enables interactions with charged molecules, but its presence may reduce permeability through biological membranes. Temporary coverage of peptide charge with lipophilic, enzyme-sensitive alkoxycarbonyl groups can resolve this issue. We present a new, optimized strategy to obtain arginine building blocks with increased lipophilicity.

MOLECULES (2023)

No Data Available