Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins

Novel eukaryotic enzymes modifying cell-surface biopolymers

(2010) Vivek Anantharaman et al.   Biology Direct

Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ

(2010) Juliane G. Bogner-Strauss et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Protein folding in membranes

(2010) Sebastian Fiedler et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

More Than 1,001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology

(2010) Wing-Cheong Wong et al.   PLoS Computational Biology

THE JANUS-FACED E-VALUES OF HMMER2: EXTREME VALUE DISTRIBUTION OR LOGISTIC FUNCTION?

(2010) WING-CHEONG WONG et al.   Journal of Bioinformatics and Computational Biology

Bioinformatic Analyses of Transmembrane Transport: Novel Software for Deducing Protein Phylogeny, Topology, and Evolution

(2009) Ming Ren Yen et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

The three-dimensional structure of the cytoplasmic domains of EpsF from the type 2 secretion system of Vibrio cholerae

(2009) Jan Abendroth et al.   JOURNAL OF STRUCTURAL BIOLOGY

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Pfam 10 years on: 10 000 families and still growing

(2008) S. J. Sammut et al.   BRIEFINGS IN BIOINFORMATICS

Inactivation of colicin Y by intramembrane helix-helix interaction with its immunity protein

(2008) David Šmajs et al.   FEBS Journal

Membrane Topology and Essential Amino Acid Residues of Phs1, a 3-Hydroxyacyl-CoA Dehydratase Involved in Very Long-chain Fatty Acid Elongation

(2008) Akio Kihara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SMART 6: recent updates and new developments

(2008) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH

Crystal structure of the human receptor activity-modifying protein 1 extracellular domain

(2008) Seisuke Kusano et al.   PROTEIN SCIENCE

Protein-Protein Interactions in the Membrane: Sequence, Structural, and Biological Motifs

(2008) David T. Moore et al.   STRUCTURE

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology